View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13590_high_3 (Length: 461)
Name: NF13590_high_3
Description: NF13590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13590_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 33162016 - 33161576
Alignment:
| Q |
9 |
gtcgccggcgctgtcttcagcggcggtggctgtgga------gggggttgtgaaatttggtgtacacgtggaggaatgggaagttgaggaaagaaagagt |
102 |
Q |
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| T |
33162016 |
gtcgccggcgctgtcttcagcggcggtggctgtggctgtggcggtggttgtgaaatttggtgtacacgtggaggaatggtaagttgaggaaagaaagagt |
33161917 |
T |
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| Q |
103 |
gttatgaggtttgtgaataaaaggagggaaatgaagagtaaattggtggttagggtttttggattagggttaatattagaacccatgttac-aaaatagg |
201 |
Q |
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| T |
33161916 |
gttatgaggtttgtgaataaaaggagggaaatgaagagtaaattggtggttagggtttttggattagggttaatattagaacccatgttacaaaaatagg |
33161817 |
T |
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| Q |
202 |
aatgtgtttattggtttgttatagattgattttgagtttgattatggttactaagcttcgaaggtagccatttttatgtgaagattttaagcattttctt |
301 |
Q |
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| T |
33161816 |
aatgtgtttattggtttgttatagattgattttgagtttgattatggttactaagcttcgaaggtagccatttttatgtgaagattttaagcattttctt |
33161717 |
T |
|
| Q |
302 |
attaagttattgtcaagtgttaaggattcctttggtatagtataatctacccagctaagcactaactggaggtagatcatgatgagttttgacttataat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33161716 |
attaagttattgtcaagtgttaaggattcctttggtatagtattatattgtgtgctaagcactaagtggaggtagatcatgatgagttttgacttataat |
33161617 |
T |
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| Q |
402 |
gtgttttatagaaagtcgacagtttgaccaagattttccac |
442 |
Q |
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| T |
33161616 |
gtgttttatagaaagtcaacagtttgaccaagattttccac |
33161576 |
T |
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