View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13590_high_9 (Length: 345)
Name: NF13590_high_9
Description: NF13590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13590_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 43601739 - 43602040
Alignment:
| Q |
14 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcaatggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaa |
113 |
Q |
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| T |
43601739 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcattggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaa |
43601838 |
T |
|
| Q |
114 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601839 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttg |
43601938 |
T |
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| Q |
214 |
tctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaattgttatccacttaacttaacc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43601939 |
tctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaatcgttatccacttaacttaacc |
43602038 |
T |
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| Q |
314 |
ag |
315 |
Q |
| |
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|| |
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| T |
43602039 |
ag |
43602040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 22436340 - 22436220
Alignment:
| Q |
149 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgca |
248 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||| |
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| T |
22436340 |
atgatatcttaaaattatgaaaatgatttctgcaccaaaacatactcccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcg |
22436241 |
T |
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| Q |
249 |
gtctgtcacgtgcatcacgtg |
269 |
Q |
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||||||||| ||||||||||| |
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| T |
22436240 |
gtctgtcacatgcatcacgtg |
22436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 22239135 - 22239084
Alignment:
| Q |
149 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgca |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22239135 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccgca |
22239084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 37560653 - 37560602
Alignment:
| Q |
149 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgca |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
37560653 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccgca |
37560602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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