View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13591_high_1 (Length: 1929)
Name: NF13591_high_1
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 1226; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1226; E-Value: 0
Query Start/End: Original strand, 579 - 1910
Target Start/End: Complemental strand, 48800051 - 48798704
Alignment:
| Q |
579 |
tcccggaagccaccacgaaccaaaccgcaccaccgtgagatgtgctgctaaacctgtcaaaacgccaccagcgacggcggcaccaccacccaccccatca |
678 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48800051 |
tcccggaagccaccacgaaccaaaccgctccaccgtgagatgtgctgctaaacctgtcaaaacgccaccagcgacggcggcaccaccacccaccccagca |
48799952 |
T |
|
| Q |
679 |
agccggaagaacagatccgagaagacacaaccaccaaaaccaatgaacagatccgaaaagacacaccggatctgacgtcggcaagaaagttgatctatag |
778 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48799951 |
agccggaagaacagatccgagaagacacaaccaccaaaaccaatgaacagatccgaaaagacacaccggatctgacgtcggcaagaaagttgatctataa |
48799852 |
T |
|
| Q |
779 |
agcaaccgccgggaaaggatgaaggacgttggtggagcagcaggagaaacacgtcgccggagctgaggtggtgcggaggccgcgcctcatcgcaccaccg |
878 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48799851 |
agcaaccgccggaaaaggatgaaggacgtcggtggagcagcaggagaaacacgtcgccggagctgaggtggtgtggaggccgcgcctcatcgcaccaccg |
48799752 |
T |
|
| Q |
879 |
tcatatggtctacatcttgagaaagtgttgttggatttgaaggagaaggagccgcgatctgttttagagagagggcacaggttttagtttagagagagaa |
978 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
48799751 |
tcatatggtctacatcttgagaaagtgttgttggatttgaaggagaaggaaccgcgatctgttttagagagagggcacaggttttagtttagagagcgaa |
48799652 |
T |
|
| Q |
979 |
aggttctttgattgcatatcttataagtatttacacgtatcttgcaaaaaataaacattgacttggattcatccaattaaggcttccaaaaaatttaaca |
1078 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48799651 |
aggttctttgattgcatatcttataagtatttacatgtatcttgcaaaaaataaacattgacttggattcatccaattaaggcttccaaaaattttaaca |
48799552 |
T |
|
| Q |
1079 |
tgattaatgatgccaattcattctcttcaccaagaataatattacaagaaaattgtgataaaatgttgcttgaagaaatgaaactccatttgaaactaca |
1178 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
48799551 |
tgattaatgatgcca----attctcttcaccaagaataatattacaagaaaattgtgataaaatgttgcttgaaaaaatgaaactccatttgaaactaca |
48799456 |
T |
|
| Q |
1179 |
gaatttacatcaaacacaaccagcctaatttaatcagttctctgaggctgactggaagatgaaaactgctgtcaagacacccaccagtcctgttacggcc |
1278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799455 |
gaatttacatcaaacacaaccagcctaatttaatcagttctctgaggctgactggaagatgaaaactgctgtcaagacacccaccagtcctgttacggcc |
48799356 |
T |
|
| Q |
1279 |
aaggcaactgtaggcagtggacttgtgagtccaaagttctacaaaatcaaagtacaagaatattgttgttattcttttgcaattct-------------- |
1364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799355 |
aaggcaactgtaggcagtggacttgtgagtccaaagttctacaaaatcaaagtacaagaatattgttgttattcttttgcaattctgcttataacaacta |
48799256 |
T |
|
| Q |
1365 |
------ctgagtgataagagaggttaagatgagtaaggagtatcaaagtcaaaacataataaagttcgttacggtttcagcgcgttgaaacttgcactca |
1458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799255 |
cctaacctgagtgataagagaggttaagatgagtaaggagtatcaaagtcaaaacataataaagttcgttacggtttcagcgcgttgaaacttgcactca |
48799156 |
T |
|
| Q |
1459 |
cttggaagtttctaatttacttttttagatgcatcatagattcagaaagttatatgaacctatatatcactacaccaactcaatagcttaaaagatcatg |
1558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48799155 |
cttggaagtttctaatttacttttttagatgcatcatagattcagaaagttatatgaacctatatatcactacaccaactcaatagcttaaaagatcatg |
48799056 |
T |
|
| Q |
1559 |
aacagacacatagcttaattttacaactagataccatacacactataaagtaaaggagaaaggaagattaccatattgcagctaaaatatcaaagcaaac |
1658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48799055 |
aacagacacatagcttaattttacaactagataccatacacactataaagtaaaggagaaaggaagattaccatattgcagctaaaatatcaaagcaaac |
48798956 |
T |
|
| Q |
1659 |
atttgagttttgacaaataggggtgatagaaagaaaaacatataagccaattatcaatcatttgatggaaattataatttgtttcatgacttaaaagatt |
1758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798955 |
atttgagttttgacaaataggggtgatagaaagaaaaacatataagccaattatcaatcatttgatggaaattataatttgtttcatgacttaaaagatt |
48798856 |
T |
|
| Q |
1759 |
gaagacaagtgattgcagtctaagtcatgcataaagtaactcaaagtttacgttatggtgtgcaaatatacctctaggagtccttttcctgaagtaattt |
1858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798855 |
gaagacaagtgattgcagtctaagtcatgcataaagtaactcaaagtttacgttatggtgtgcaaatatacctctaggagtccttttcctgaagtaattt |
48798756 |
T |
|
| Q |
1859 |
caacagtaatggctactgcaaaaccaaccatggctacccggccaagccatac |
1910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48798755 |
caacagtaatggctactgcaaaaccaaccatggctacccggccaagccatac |
48798704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-46
Query Start/End: Original strand, 343 - 505
Target Start/End: Complemental strand, 4304932 - 4304769
Alignment:
| Q |
343 |
gtggagtgaaacggtatataaaggacccgcggagatgctgccggaaacaaatggccgccggaatcctaaagggcaacgaatctgaaaac-gagctaaagg |
441 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||| ||||| |||||||||| |
|
|
| T |
4304932 |
gtggagtgaaacggtatataaatgacgcgcggagatgctgtcggaaacaaatggtcgccggaatccaaaaaggcaacgaatctaaaaacggagctaaagg |
4304833 |
T |
|
| Q |
442 |
aaggaagcttaaccaccgcgaaactgaacaacaaccgccgcaaaacggccaccaagcagatccg |
505 |
Q |
| |
|
||||| ||||||||||||| | |||||||||| |||||| ||||||||||| ||||| ||||| |
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|
| T |
4304832 |
aaggaggcttaaccaccgcagatctgaacaacagccgccgtaaaacggccactaagcaaatccg |
4304769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-43
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 7702806 - 7702641
Alignment:
| Q |
343 |
gtggagtgaaacggtatataaaggacccgcggagatgctgccggaaacaaatggccgccggaatcctaaagggcaacgaatctgaaaac-gagctaaagg |
441 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| | | ||||||| ||| |||||||||||||||||| || ||||||| |
|
|
| T |
7702806 |
gtggagtgaaacggtatataaaggacgcgcagagatgctgtcggaaacaaatggtctctggaatccaaaaaggcaacgaatctgaaaacggaactaaagg |
7702707 |
T |
|
| Q |
442 |
aaggaagcttaaccaccgcgaaactgaacaacaaccgccgcaaaacggccaccaagcagatccggat |
508 |
Q |
| |
|
|||| || ||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
7702706 |
aagg-aggttaaccaccgcagatctgaacaacagccgccgcaaaacggccaccaagcaaatccggat |
7702641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-28
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 4305240 - 4305148
Alignment:
| Q |
37 |
atcaacaacaccatggcactcggaagaagaagtcacggtgaatacccataaaccaacgataaagactgaactactccagctaaccacctcacc |
129 |
Q |
| |
|
||||||||||||||| || | ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4305240 |
atcaacaacaccatgacatttcgaagaagtagtcacggtgaatacccacaaaccaacgataaagactgaactacaccagctaaccacctcacc |
4305148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 4305089 - 4305005
Alignment:
| Q |
188 |
cgggcagcgacggcggtctgaagcggaaaactcaacccaaattattgaaaagcgactgtcggtgacaa-gagaaggcgcccgtcg |
271 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||| ||||||| ||||||| | || |||||| |||||||||||||||| |
|
|
| T |
4305089 |
cgggcagcgacgccggtctgaggcagaaaactcaacccagattattgcaaagcgatcgccgatgacaaggagaaggcgcccgtcg |
4305005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 7702947 - 7702865
Alignment:
| Q |
190 |
ggcagcgacggcggtctgaagcggaaaactcaacccaaattattgaaaagcgactgtcggtgac-aagagaaggcgcccgtcg |
271 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||| ||||| || ||||||| ||||||||||| |||||| |
|
|
| T |
7702947 |
ggcagcgacgctagtctgaggcggaaaactcaacccagattattgcaaagcaaccaccggtgacaaagagaaggcgtccgtcg |
7702865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 833 - 894
Target Start/End: Complemental strand, 38148746 - 38148684
Alignment:
| Q |
833 |
cgccggagctgaggtggtgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatc |
894 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||||| ||| ||| |||||||| |
|
|
| T |
38148746 |
cgccggaggtgaggtgatgcggaggccgcacctcatcgcaccaccgccatttggatctacatc |
38148684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 850 - 898
Target Start/End: Complemental strand, 13994549 - 13994500
Alignment:
| Q |
850 |
tgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatcttga |
898 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
13994549 |
tgcggaggccgtgcctcatcgcaccaccgtcataaggatctacatcttga |
13994500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 842 - 894
Target Start/End: Original strand, 36594250 - 36594303
Alignment:
| Q |
842 |
tgaggtggtgcggaggccgcgcctcatcgcaccaccgtcatatgg-tctacatc |
894 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
36594250 |
tgaggtgttgcggaggccgcgcctcatcgcaccaccatcatttggatctacatc |
36594303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 5556018 - 5555981
Alignment:
| Q |
188 |
cgggcagcgacggcggtctgaagcggaaaactcaaccc |
225 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
5556018 |
cgggcagcgacgccggtctgaagcggaaaacacaaccc |
5555981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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