View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_high_10 (Length: 365)
Name: NF13591_high_10
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 35 - 365
Target Start/End: Complemental strand, 30478983 - 30478645
Alignment:
| Q |
35 |
ttttgttaccttttcttaatgacgttcattaacaatatctataaaaaaggatcctgtctccaagatgtcaagcaacgagacctcattgacagtaatccga |
134 |
Q |
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| T |
30478983 |
ttttgttaccttttcttaatgacgttcattaacaatatctataaaaaaggatcctgtctccaagatgtcaagcaacgagacctcattggcagtaatccga |
30478884 |
T |
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| Q |
135 |
cgtttttctcgttggagtagttcattaatcagcatgcatgtaatg---taattaattaat----taatgatctgaaatacaccgtaactaaagtactacc |
227 |
Q |
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| T |
30478883 |
cgtttttctcgttggagtagttcattaatcagcatgcatgtaattaattaattaattaattaattaatgatctgaaatacaccgtaactaaagtactacc |
30478784 |
T |
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| Q |
228 |
accattttcttaaagtactattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaaatatctgcctccac-aa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
30478783 |
accattttcttaaagtactattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaattatctgcctccacaaa |
30478684 |
T |
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| Q |
327 |
gaattttgtatccaagttccttaaactctcctcttaatt |
365 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |
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| T |
30478683 |
gaatttggtattcaagttccttaaactctcctcttaatt |
30478645 |
T |
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