View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_high_2 (Length: 546)
Name: NF13591_high_2
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 45036988 - 45037491
Alignment:
| Q |
1 |
ttgtggaatacagcaagatgatatacttggacggagacattcaagtttatgaaaacatagaccatctctttgatctaccagatggtcatttctacgctgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45036988 |
ttgtggaatacagcaagatgatatacttggacggagacattcaagtttatgaaaacatagaccatctctttgatctaccagatggtcatttctacgctgt |
45037087 |
T |
|
| Q |
101 |
tatggattgtttttgcgagagaacttggagtcacacaccacaatacaaaatcggttattgtcaacaatgtccagaaaaagtgcattggccaaaggaaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45037088 |
tatggattgtttttgcgagagaacttggagtcacacaccacaatacaaaatcggttattgtcaacaatgtccagaaaaagttcattggccaaaggaaatg |
45037187 |
T |
|
| Q |
201 |
ggtcaacctccttcactttacttcaatgctggcatgttcctgtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037188 |
ggtcaacctccttcactttacttcaatgctggcatgttcctgtttgagccaagcattgatacttaccacgatcttttgaagacacttaaagttactcctc |
45037287 |
T |
|
| Q |
301 |
ctactccttttgctgaacaagatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45037288 |
ctactccttttgctgaacaagatttcttgaatatgtatttcaaggatatttataagccaatcccatttgtttacaatcttgttcttgctatgttatggcg |
45037387 |
T |
|
| Q |
401 |
tcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatggaatgcatattttgatttattgattgtgtgaataa |
500 |
Q |
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| T |
45037388 |
tcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatgcaatgcatattttgatttattgattgtgtgaataa |
45037487 |
T |
|
| Q |
501 |
attt |
504 |
Q |
| |
|
|||| |
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|
| T |
45037488 |
attt |
45037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 45944574 - 45944411
Alignment:
| Q |
9 |
tacagcaagatgatatacttggacggagacattcaagtttatgaaaacatagaccatctctttgatctaccagatggtcatttctacgctgttatggatt |
108 |
Q |
| |
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|||||||||||||| ||||| || || ||||| ||||| | ||||||||| || ||||| |||||||| || |||| | | ||||| ||||| ||||| | |
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| T |
45944574 |
tacagcaagatgatctacttagatggtgacatccaagtgtttgaaaacattgatcatctatttgatctgcctgatgattacttctatgctgtgatggact |
45944475 |
T |
|
| Q |
109 |
gtttttgcgagagaacttggagtcacacaccacaatacaaaatcggttattgtcaacaatgtcc |
172 |
Q |
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|||| || || | |||||||||||||| || || || || || || || |||||||||||||| |
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|
| T |
45944474 |
gtttctgtgaaaagacttggagtcacactcctcagtataagattggatactgtcaacaatgtcc |
45944411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 451
Target Start/End: Complemental strand, 45944147 - 45944023
Alignment:
| Q |
327 |
ttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagcttcata |
426 |
Q |
| |
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||||| |||||||||||||||| || ||||| || || || ||||||||||| | || ||| | |||||||||||||| |||||||||||| | | |
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|
| T |
45944147 |
ttgaacatgtatttcaaggataaatacaagcctatacctaatgtgtacaatcttgtgttggccatgatgtggcgtcatcctgagaatgttgagcttgaga |
45944048 |
T |
|
| Q |
427 |
aagtcaaggttgttcactattgtgc |
451 |
Q |
| |
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|||| | ||||||||||||||||| |
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|
| T |
45944047 |
aagttcaagttgttcactattgtgc |
45944023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 320 - 461
Target Start/End: Original strand, 20395224 - 20395365
Alignment:
| Q |
320 |
agatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgag |
419 |
Q |
| |
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|||||| ||||||||||||||||| |||| |||||||| ||||| |||||||||||||| || || ||||| |||||||||||||| |||||||| |
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| T |
20395224 |
agattttttgaatatgtatttcaatgataaatataagcctatccctaatgtttacaatcttgtgctggccatgttgtggcgtcatcctgagaatgttgaa |
20395323 |
T |
|
| Q |
420 |
cttcataaagtcaaggttgttcactattgtgcagcggtaagt |
461 |
Q |
| |
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||| | |||||||| |||||||| || ||||||||||||||| |
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|
| T |
20395324 |
cttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 37687052 - 37686915
Alignment:
| Q |
321 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
420 |
Q |
| |
|
||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37687052 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37686953 |
T |
|
| Q |
421 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
458 |
Q |
| |
|
|| | |||||||| |||||||| || |||||||||||| |
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|
| T |
37686952 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 37698466 - 37698603
Alignment:
| Q |
321 |
gatttcttgaatatgtatttcaaggatatttataagccaatcccattggtttacaatcttgttcttgctatgttatggcgtcatcctgaaaatgttgagc |
420 |
Q |
| |
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||||| ||||| || |||||||| || | ||||||||||| ||| ||||| |||||||| | || ||||| |||||||| ||||| |||||||| | |
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| T |
37698466 |
gattttttgaacatatatttcaaagacaaatataagccaattccaaatgtttataatcttgtgttggccatgttgtggcgtcaccctgagaatgttgaac |
37698565 |
T |
|
| Q |
421 |
ttcataaagtcaaggttgttcactattgtgcagcggta |
458 |
Q |
| |
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|| | |||||||| |||||||| || |||||||||||| |
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| T |
37698566 |
ttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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