View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_high_3 (Length: 488)
Name: NF13591_high_3
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 1587921 - 1588381
Alignment:
| Q |
18 |
aggagtactaaggttcttaccctacttgatctaattataccatttaatcaattcaaaactcatttctttctcatcatcctccatcttctcctcatattct |
117 |
Q |
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| T |
1587921 |
aggagtactaaggttcttaccctgcttgatctaattttaccatttaatcaattcaaaactcatttctttctcatcatcctccatcttctcctcatattct |
1588020 |
T |
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| Q |
118 |
cttctctttactatgtaattgcgatattcatcaatgctatgtcttttttcagttttaaaatgtttgttgcataaaaatttggtcacaacttgcagagaat |
217 |
Q |
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| T |
1588021 |
cttctctttactatgtaattgcgatattcatcaatgctatgtcttttttcagttttaaaatgtttgttgcatacaaatttggtcacaacttgcagagaat |
1588120 |
T |
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| Q |
218 |
gaaaaaagagggagcaaatacagaagaaattgaaaccacaacaacaattggggttttagtagagaaattgaatgataagaccatttttaacgaaagtggc |
317 |
Q |
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| T |
1588121 |
gaaaaaagagggagcaaatacagaagaaattgaaaccacaacaacaattggggttttagtagagaaattgaatgataagaccatttttaacgaaagtggc |
1588220 |
T |
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| Q |
318 |
gaagaacacgaccgagggttcaacaacgagtcaataattcaatgaagnnnnnnnagtcaagagtaggcgatgtttgagaaaaatatattttgtatgaata |
417 |
Q |
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| T |
1588221 |
gaagaacacgaccgaaggttcaacaacgagtcaataattcaatgaagtttttttagtcaagagtaggcgatgtttgagaaaaatatattttgtatgaata |
1588320 |
T |
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| Q |
418 |
gtgtatcattcgatctaacgaaccttcaacatctattgtaagttatccattgttgatgatg |
478 |
Q |
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| T |
1588321 |
gtgtatcattcgatctaacgaaccttcaacatctatcgtaagttatccattgttcatgatg |
1588381 |
T |
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