View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_high_4 (Length: 467)
Name: NF13591_high_4
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 2146545 - 2146098
Alignment:
| Q |
1 |
ttgtcctgttgcatggaccttgaatggattggtgacttcccaatatggacacaacatggacacacttgataatggtcaaagtgttgaagaatttgttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146545 |
ttgtcctgttgcatggaccttgaatggattggtgacttcccaatatggacacaacatggacacacttgataatggtcaaagtgttgaagaatttgttagg |
2146446 |
T |
|
| Q |
101 |
aattactttggttttgaacatgacttcctaggagtggttgcaattgttgtggttagtttctcagtgttgtttgcacttatcttcacctttggtatcaaag |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146445 |
aattactttggttttgaatatgacttcctaggagtggttgcaattgttgtggttagtttctcagtgttgtttgcacttatcttcacctttggtatcaaag |
2146346 |
T |
|
| Q |
201 |
cattcaacttccaaaaacgatgaaatcactccaatgcttctcttcaaaagctttgatcacaatattctttaggaaacatggttctcatattctcaatgta |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146345 |
cattcaacttccaaaaaagatgaaatcactccaatgcttctcttcaaaagctttgatcacaatattctttaggaaacatggttctcatattctcaatgta |
2146246 |
T |
|
| Q |
301 |
aggataaatctaaagccatacatgaatgaagaagaacctcatgtaactatattaggcataattttttcagtaaaggaacaattaagctatttactaggta |
400 |
Q |
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| T |
2146245 |
aggataaatctaaagccatacatgaatgaagaagaacctcatgtaactatattaggcataa--ttttcagtaaaggaacaattaagctatttactaggta |
2146148 |
T |
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| Q |
401 |
ttctgatttgattcgctgaaagtttagattagtattaaagtgttcattag |
450 |
Q |
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| T |
2146147 |
ttctgatttgattcactgaaagtttagatttgtattaaagtgttcattag |
2146098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2158010 - 2157784
Alignment:
| Q |
1 |
ttgtcctgttgcatggaccttgaatggattggtgacttcccaatatggacacaacatggacacacttgataatggtcaaagtgttgaagaatttgttagg |
100 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||| | | |||||| ||||||||||| |||||||||||||||| | |
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| T |
2158010 |
ttgtcctgttgcatggacattgtatggattggtgacttctcaatatggagacaacatgcagaaacttgagaatggtcaaagggttgaagaatttgttaag |
2157911 |
T |
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| Q |
101 |
aattactttggttttgaacatgacttcctaggagtggttgcaattgttgtggttagtttctcagtgttgtttgcacttatcttcacctttggtatcaaag |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2157910 |
agttactttggttttgaacatgacttcctaggagtggttgcaattgttgtggttagtttctcagtgttctttgcacttatcttcacctttggtatcaaag |
2157811 |
T |
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| Q |
201 |
cattcaacttccaaaaacgatgaaatc |
227 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
2157810 |
cattcaacttccaaaaaagatgaaatc |
2157784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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