View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_high_5 (Length: 458)
Name: NF13591_high_5
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 93 - 441
Target Start/End: Complemental strand, 4444982 - 4444631
Alignment:
| Q |
93 |
gtgagtttcttagagggatgatgttgacaaacaaggaattagcaatgatcattaacgacaataaacagaagaggcctctgtgtgtccggtgactctaact |
192 |
Q |
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| T |
4444982 |
gtgagtttcttagagggatgatgttgacaaacaaggaa---gcaatgatcattaacgacaataaacagaagaggcctc-gtgtgtccggtgactctaact |
4444887 |
T |
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| Q |
193 |
gtgtaacttcgcaacctctaacaaattactcttttgtcaacaaagcagccgcaaacgtggctttttgaaatgaatgaaaaaacattcaagaatccctttt |
292 |
Q |
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| T |
4444886 |
gtgtaactttgcaacctctaacaaattactcttttgtcaacaacgcagccgcaaacgtggctttt-gaaatgactgaaaaaacattcaagaatcccttct |
4444788 |
T |
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| Q |
293 |
tcccggttgatttcgatacttactgatcgttagcagtcgggtaggtcttttgtt--------tttgagacaatgctattgcctatgcatccaagggttat |
384 |
Q |
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| T |
4444787 |
tcccagttgatttcgatacttactgatcgttagcagtcgggtaagtcttttgtttttgggtttttgagacaatgctattgcctatgcatccaagggttat |
4444688 |
T |
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| Q |
385 |
cccattttgtgactcaatcaaaccaattgagacagcagcaaccaagtttgatgtata |
441 |
Q |
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| T |
4444687 |
ccctttttgtgactcaatcaaaccaattgagacagcagcaaccaagtttgatgtata |
4444631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4445064 - 4445016
Alignment:
| Q |
17 |
atgaacaagacagaaaaatcaaacaatggaaggaaacaagactatggtt |
65 |
Q |
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| T |
4445064 |
atgaacaacacagaaaaatcaaacaatggaaggaaacaagactatggtt |
4445016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 344 - 437
Target Start/End: Original strand, 37558671 - 37558764
Alignment:
| Q |
344 |
gtttttgagacaatgctattgcctatgcatccaagggttatcccattttgtgactcaatcaaaccaattgagacagcagcaaccaagtttgatg |
437 |
Q |
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| T |
37558671 |
gtttttgaggtaatgctattgcctatgcatccaagggttatcccttttttggactcaatcaaaccaattgaagcagcagcaaccaggtttgatg |
37558764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 324
Target Start/End: Original strand, 37558480 - 37558610
Alignment:
| Q |
193 |
gtgtaacttcgcaacctctaacaaattactcttttgtcaacaaagcagccgcaaacgtggctttttgaaatgaatgaaaaaacattcaagaatccctttt |
292 |
Q |
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| T |
37558480 |
gtgtaacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggc-tttcaaaatgactgaaaaatcactcaaggatcccttct |
37558578 |
T |
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| Q |
293 |
tcccggttgatttcgatacttactgatcgtta |
324 |
Q |
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| T |
37558579 |
tcccagttgatttggatacttattgttcgtta |
37558610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 34257710 - 34257758
Alignment:
| Q |
344 |
gtttttgagacaatgctattgcctatgcatccaagggttatcccatttt |
392 |
Q |
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| T |
34257710 |
gtttttgaagcaatgctattgcctacgcatccaacggttatcccgtttt |
34257758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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