View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13591_low_11 (Length: 314)
Name: NF13591_low_11
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13591_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 33713296 - 33713417
Alignment:
| Q |
180 |
gtagttttacattaaaataaatattagcttggaaccaccttaaaattcatgttgcctaactgaagatcacgagttcaatatggggtagacaataatctga |
279 |
Q |
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| T |
33713296 |
gtagttttacattaaaataaattttagcttggaaccaccttaaaattcatgttgcctaactgaaggtcacgagtctaatatggggtagacaataatctca |
33713395 |
T |
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| Q |
280 |
gtcattcctaacttaaaagtga |
301 |
Q |
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| T |
33713396 |
gtcatccctaattcaaaagtga |
33713417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 33713121 - 33713231
Alignment:
| Q |
7 |
gtttgatctaaagatattttatatggaatcttgagttcgaacccaggtcaccacactcatcctcctcatgtgtgcgttttatttgaatatgtgtttacca |
106 |
Q |
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| T |
33713121 |
gttttatctaaatatattttatacggaatttggagttcgaactcaggtcaccacactcatcctcctcatgtgtgcg-tttatttgaatatgtgtttacca |
33713219 |
T |
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| Q |
107 |
ctatgtcaatag |
118 |
Q |
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| T |
33713220 |
ctatgtcaatag |
33713231 |
T |
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