View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13591_low_20 (Length: 214)

Name: NF13591_low_20
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13591_low_20
NF13591_low_20
[»] chr3 (17 HSPs)
chr3 (55-214)||(55114745-55114904)
chr3 (1-48)||(32956516-32956563)
chr3 (1-47)||(29076521-29076567)
chr3 (6-44)||(37740048-37740086)
chr3 (1-38)||(24350811-24350848)
chr3 (7-48)||(43883854-43883895)
chr3 (1-42)||(55198611-55198652)
chr3 (1-49)||(29352826-29352874)
chr3 (1-49)||(32956412-32956460)
chr3 (1-37)||(55114627-55114663)
chr3 (1-47)||(17004954-17005000)
chr3 (1-38)||(13084143-13084180)
chr3 (1-42)||(38446836-38446877)
chr3 (1-42)||(40760772-40760813)
chr3 (1-49)||(25245246-25245294)
chr3 (1-49)||(26043244-26043292)
chr3 (1-41)||(28811612-28811652)
[»] chr8 (8 HSPs)
chr8 (6-48)||(36827056-36827098)
chr8 (1-49)||(42348882-42348929)
chr8 (8-47)||(3611874-3611913)
chr8 (6-49)||(16382529-16382572)
chr8 (1-48)||(43844719-43844766)
chr8 (1-41)||(26489703-26489743)
chr8 (1-49)||(30538050-30538098)
chr8 (1-49)||(44838872-44838920)
[»] chr2 (12 HSPs)
chr2 (1-47)||(35567236-35567282)
chr2 (3-48)||(18967219-18967264)
chr2 (1-49)||(29573808-29573856)
chr2 (1-48)||(4101943-4101990)
chr2 (1-48)||(19250212-19250259)
chr2 (6-48)||(8079447-8079489)
chr2 (6-47)||(35567144-35567185)
chr2 (1-41)||(6006684-6006724)
chr2 (1-49)||(12017753-12017801)
chr2 (8-48)||(14152185-14152225)
chr2 (1-49)||(20195283-20195331)
chr2 (1-49)||(29573912-29573960)
[»] chr1 (8 HSPs)
chr1 (7-48)||(7230163-7230204)
chr1 (1-50)||(16427006-16427055)
chr1 (1-42)||(6792372-6792413)
chr1 (1-42)||(10008822-10008863)
chr1 (1-46)||(10008919-10008964)
chr1 (1-42)||(50656532-50656573)
chr1 (1-49)||(2091740-2091788)
chr1 (8-48)||(6169916-6169956)
[»] chr5 (15 HSPs)
chr5 (3-47)||(5089553-5089597)
chr5 (1-48)||(11401584-11401631)
chr5 (1-47)||(9087523-9087569)
chr5 (1-47)||(33677188-33677234)
chr5 (1-44)||(8468355-8468398)
chr5 (1-48)||(38404143-38404190)
chr5 (7-49)||(8222254-8222296)
chr5 (1-42)||(4151253-4151294)
chr5 (6-47)||(6205064-6205105)
chr5 (1-42)||(20207249-20207290)
chr5 (6-51)||(21916919-21916964)
chr5 (8-40)||(8638744-8638776)
chr5 (1-49)||(13420532-13420580)
chr5 (8-44)||(23591996-23592032)
chr5 (1-49)||(41062469-41062517)
[»] chr4 (10 HSPs)
chr4 (1-49)||(51394092-51394140)
chr4 (3-48)||(25250868-25250913)
chr4 (1-50)||(27628468-27628517)
chr4 (7-48)||(48472749-48472790)
chr4 (1-52)||(20787654-20787705)
chr4 (1-47)||(31914426-31914472)
chr4 (1-47)||(35003208-35003254)
chr4 (3-47)||(26206590-26206634)
chr4 (1-41)||(38224035-38224075)
chr4 (7-47)||(48088006-48088046)
[»] chr6 (8 HSPs)
chr6 (1-47)||(32436262-32436308)
chr6 (1-49)||(25363831-25363879)
chr6 (1-48)||(667723-667770)
chr6 (1-48)||(7498426-7498473)
chr6 (1-47)||(26575653-26575699)
chr6 (7-48)||(14498614-14498655)
chr6 (1-41)||(2343343-2343383)
chr6 (1-41)||(3212243-3212283)
[»] chr7 (9 HSPs)
chr7 (1-49)||(4027212-4027260)
chr7 (1-41)||(24936683-24936723)
chr7 (1-49)||(39976142-39976190)
chr7 (1-47)||(2738936-2738982)
chr7 (1-47)||(4187988-4188034)
chr7 (8-49)||(30005870-30005911)
chr7 (7-48)||(42644171-42644212)
chr7 (6-42)||(25250260-25250296)
chr7 (1-49)||(45833288-45833336)
[»] scaffold0110 (2 HSPs)
scaffold0110 (1-47)||(10185-10231)
scaffold0110 (1-47)||(17922-17968)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-47)||(8374-8420)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 55114745 - 55114904
Alignment:
Q  55 tactacactaattaaataaactcgtgttaattccaatgcatctttttaaatcttccaattgaccaccgcaattcattatactatacagctttcacaatag 154  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  55114745 tactacactaattaaataaactcgtgttagttccaatgcatctttttaaatcttccaattgaccaccgcagttcattatactatacaactttcacaatag 55114844  T
Q  155 tagtcgaaaaaactatattcaattaacttttcattttcaaataattttctctgggttatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55114845 tagtcgaaaaaactatattcaattaacttttcattttcaaataattttctctgggttatt 55114904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32956516 - 32956563
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||    
T  32956516 tgaatctaaaaagtcaattttacttatatttagaaacggaggaagtat 32956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29076567 - 29076521
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||    
T  29076567 tgaacctaaaagatcaattttacttatatttaaaaacggaggaagta 29076521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37740048 - 37740086
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaa 44  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  37740048 ctaaaaaatcaattttacttatatttaaaaacggaggaa 37740086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24350848 - 24350811
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacg 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24350848 tgaatctaaaaaatcaattttacttatatttaaaaacg 24350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 43883895 - 43883854
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  43883895 taaaaaatcaattttacttatatttaaaaatggaggaagtat 43883854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 55198652 - 55198611
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  55198652 tgaatctaaaaagtcaattttacttatatttaaaaacggagg 55198611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29352826 - 29352874
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| ||||||||| |||||||||| |||||||||||||||| ||||||    
T  29352826 tgaacctaaaaaataaattttacttatatttaaaaacggagggagtata 29352874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32956460 - 32956412
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  32956460 tgaacctaaaaagtcaattttgcttatatttaaaaacggaggaagtata 32956412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 55114663 - 55114627
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaac 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55114663 tgaatttaaaaaatcaattttacttgtatttaaaaac 55114627  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17005000 - 17004954
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||| |||||||||||||||| ||| |||||||||||||||| ||||    
T  17005000 tgaacctaaaaaatcaattttgcttatatttaaaaacggagggagta 17004954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13084143 - 13084180
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacg 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  13084143 tgaatctaaaaagtcaattttacttgtattaaaaaacg 13084180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38446836 - 38446877
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  38446836 tgaacctaaaaagtcaattttacttatatttaaaaacggagg 38446877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40760813 - 40760772
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  40760813 tgaacctaaaaaatcaattttacttatatttagaaacggagg 40760772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25245246 - 25245294
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| |||||||||||| |||||| ||||||| | ||||||    
T  25245246 tgaatctaaaaagtcaattttacttatatttagaaacggatggagtata 25245294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26043292 - 26043244
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| | || ||||||| |||||||||||||||||| ||||    
T  26043292 tgaatctaaaaagtaaaatttacttatatttaaaaacggaggaaatata 26043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28811612 - 28811652
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  28811612 tgaacctaaaaaatcaattttacttatatttaaagacggag 28811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 36827056 - 36827098
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  36827056 ctaaaaaatcaattttacttctatttaaaaacggaggaagtat 36827098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42348882 - 42348929
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  42348882 tgaatctaaaaaatcaattttac-tatatttaaaaacggaggaagtata 42348929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 3611874 - 3611913
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  3611874 aaaaaatcaattttacttatatttaaaaacagaggaagta 3611913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 16382529 - 16382572
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||||||||||||||| || |||||||||| ||||||||||||    
T  16382529 ctaaaaaatcaattttatttatatttaaaaatggaggaagtata 16382572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43844766 - 43844719
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||| ||||||| ||| |||||||||||||||| |||||    
T  43844766 tgaatctaaaaaaccaattttgcttatatttaaaaacggagggagtat 43844719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26489703 - 26489743
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||| ||||||||| |||||||||| |||||||||||||||    
T  26489703 tgaacctaaaaaattaattttacttatatttaaaaacggag 26489743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30538098 - 30538050
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||||| |||||||||| |||||| ||||||| | ||||||    
T  30538098 tgaatctaaaaaattaattttacttatatttagaaacggatggagtata 30538050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44838872 - 44838920
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||| |||||||||||||||||| |||||||||| ||| | ||||||    
T  44838872 tgaatccaaaaaatcaattttacttatatttaaaaatggaaggagtata 44838920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35567236 - 35567282
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35567236 tgaatctaaaaaatcaattttacttatatttaaaaacggagggagta 35567282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 18967264 - 18967219
Alignment:
Q  3 aatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||    
T  18967264 aatctaaaaaatcaattttacttatatttaaatacggagggagtat 18967219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29573856 - 29573808
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| |||||||| ||| |||||||||||||||| ||||||    
T  29573856 tgaatctaaaaagtcaattttgcttatatttaaaaacggagggagtata 29573808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4101990 - 4101943
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||| ||||||| |||||||||||| |||||||||||||||| |||||    
T  4101990 tgaacctaaaaagtcaattttacttatatttaaaaacggagggagtat 4101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19250212 - 19250259
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||| |||||||  ||||||||||| ||||||||||||||||||||||    
T  19250212 tgaacctaaaaagccaattttacttatatttaaaaacggaggaagtat 19250259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 8079447 - 8079489
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||||| || |||||||||||||||| |||||    
T  8079447 ctaaaaaatcaattttatttatatttaaaaacggagggagtat 8079489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 35567185 - 35567144
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||| ||| |||||||||||||||| ||||    
T  35567185 ctaaaaaatcaattttgcttatatttaaaaacggagggagta 35567144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6006724 - 6006684
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  6006724 tgaatctaaaaagtcaattttatttatatttaaaaacggag 6006684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12017801 - 12017753
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| |||||||| ||| |||||||| ||||||| ||||||    
T  12017801 tgaatctaaaaagtcaattttgcttatatttaaagacggaggtagtata 12017753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 14152225 - 14152185
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||||||||||| ||| |||||||||||||||| |||||    
T  14152225 aaaaaatcaattttgcttatatttaaaaacggagggagtat 14152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20195331 - 20195283
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| | || ||||||| ||||| |||||||||||||||||    
T  20195331 tgaatctaaaaagtaaaatttacttatattttaaaacggaggaagtata 20195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29573912 - 29573960
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| ||||||||||| |||||||| |||||||||||||| | ||||||    
T  29573912 tgaacctaaaaaatcacttttacttatatttaaaaacggatggagtata 29573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 7230163 - 7230204
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  7230163 taaaaaatcaattttgcttgtatttaaaaacggaggaagtat 7230204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16427006 - 16427055
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtatac 50  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  16427006 tgaatctaaaaaatcaattttgcttatatttaaaaacggagggagtatac 16427055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6792413 - 6792372
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  6792413 tgaatctaaaaagtcaattttgcttatatttaaaaacggagg 6792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10008863 - 10008822
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||| |||||||||||||||||||| |||||| |||||||||    
T  10008863 tgaacctaaaaaatcaattttacttatatttagaaacggagg 10008822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10008919 - 10008964
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagt 46  Q
    |||| |||||| ||||||||| ||| ||||||||||||||||||||    
T  10008919 tgaacctaaaacatcaattttgcttatatttaaaaacggaggaagt 10008964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50656573 - 50656532
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||| |||||||||||||||||||| ||||||||||| ||||    
T  50656573 tgaacctaaaaaatcaattttacttatatttaaaaactgagg 50656532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2091788 - 2091740
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| ||||||| |||| ||||||| ||||| |||||||||||||||||    
T  2091788 tgaacctaaaaagtcaaatttacttatattttaaaacggaggaagtata 2091740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 6169916 - 6169956
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||| || |||||||||||||||| |||||    
T  6169916 aaaaaatcaattttatttatatttaaaaacggagggagtat 6169956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 5089553 - 5089597
Alignment:
Q  3 aatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  5089553 aatctaaaaaatcaattttatttatatttaaaaacggaggaagta 5089597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11401584 - 11401631
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||    
T  11401584 tgaatctaaaaagtcaattttacttatatttaaaaacgaaggaagtat 11401631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9087569 - 9087523
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  9087569 tgaatctaaaacatcaattttacttatatttaaaaacggatgaagta 9087523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33677234 - 33677188
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||    
T  33677234 tgaatctaaaaattcaattttacttatatttaaagacggaggaagta 33677188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8468398 - 8468355
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaa 44  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||    
T  8468398 tgaatctaaaaaattaattttgcttatatttaaaaacggaggaa 8468355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38404190 - 38404143
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||| |||||||||||||||||||| |||||||| ||||||| |||||    
T  38404190 tgaacctaaaaaatcaattttacttatatttaaagacggagggagtat 38404143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 8222296 - 8222254
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||| |||||||||| |||||||||||||| ||||||||    
T  8222296 taaaaaataaattttacttatatttaaaaacggatgaagtata 8222254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4151253 - 4151294
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  4151253 tgaacctaaaaagtcaattttacttgtatttagaaacggagg 4151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 6205105 - 6205064
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||| ||| |||||||||||| ||||||||    
T  6205105 ctaaaaaatcaatttttcttatatttaaaaacgaaggaagta 6205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20207249 - 20207290
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    |||||||||||||| |||||||||| ||||||||||| ||||    
T  20207249 tgaatctaaaaaataaattttacttatatttaaaaacagagg 20207290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 21916964 - 21916919
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggaggaagtatact 51  Q
    |||||||||||||||||||| || |||| ||||||||||| |||||    
T  21916964 ctaaaaaatcaattttacttataattaataacggaggaagcatact 21916919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 8638744 - 8638776
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacgga 40  Q
    |||||||||||||||||| ||||||||||||||    
T  8638744 aaaaaatcaattttacttatatttaaaaacgga 8638776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13420532 - 13420580
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| |||||||||||| ||| ||| |||||||||||||||| ||||||    
T  13420532 tgaacctaaaaaatcaaatttgcttatatttaaaaacggagggagtata 13420580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 23592032 - 23591996
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacggaggaa 44  Q
    |||||||||||||||||| |||||||| |||||||||    
T  23592032 aaaaaatcaattttacttatatttaaagacggaggaa 23591996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41062517 - 41062469
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||||||| ||||||||||| ||| |||||| ||||||| ||||||||    
T  41062517 tgaatctaacaaatcaattttgcttatatttagaaacggatgaagtata 41062469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 51394140 - 51394092
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  51394140 tgaatataaaaagtcaattttacttatatttaaaaacggaggaagtata 51394092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25250868 - 25250913
Alignment:
Q  3 aatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||    
T  25250868 aatctaaaaaatcaattttacttataattaaaaacggagggagtat 25250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27628468 - 27628517
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtatac 50  Q
    |||| ||||||||| |||||||||| |||||||||||||||| |||||||    
T  27628468 tgaacctaaaaaataaattttacttatatttaaaaacggagggagtatac 27628517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 48472790 - 48472749
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  48472790 taaaaagtcaattttacttatatttaaaaacggaggaagtat 48472749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20787654 - 20787705
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtatacta 52  Q
    |||||||||||| |||||||||||| |||| ||| ||||||| |||||||||    
T  20787654 tgaatctaaaaagtcaattttacttatattaaaatacggagggagtatacta 20787705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31914426 - 31914472
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||||    
T  31914426 tgaatctaaaaagtcaattttacttatatttagaaacggagggagta 31914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35003208 - 35003254
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    ||||||||||||||||||||||||| || ||||||| ||||| ||||    
T  35003208 tgaatctaaaaaatcaattttacttatacttaaaaatggagggagta 35003254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 26206634 - 26206590
Alignment:
Q  3 aatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||| | || ||||||| |||||||||||||||||||||    
T  26206634 aatctaaaaagtaaaatttacttatatttaaaaacggaggaagta 26206590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38224035 - 38224075
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||||||||||| |||||||| ||| |||||||||||||||    
T  38224035 tgaatctaaaaagtcaattttgcttatatttaaaaacggag 38224075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 48088046 - 48088006
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  48088046 taaaaagtcaattttgcttatatttaaaaacggaggaagta 48088006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32436308 - 32436262
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||||    
T  32436308 tgaacctaaaaaaacaattttacttatatttaaaaacggaggaagta 32436262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25363831 - 25363879
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||| ||||||| |||||||| |||||||||||||||||||| ||||||    
T  25363831 tgaacctaaaaagtcaattttgcttgtatttaaaaacggagggagtata 25363879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 667770 - 667723
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||| |||||||||||||||| ||| |||||||||||||||| |||||    
T  667770 tgaacctaaaaaatcaattttgcttatatttaaaaacggagggagtat 667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7498473 - 7498426
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||| ||||||| |||||||||||| |||||||||||||||| |||||    
T  7498473 tgaacctaaaaagtcaattttacttatatttaaaaacggagggagtat 7498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26575699 - 26575653
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||||||||  || |||||||||||||||| ||||    
T  26575699 tgaatctaaaaaatcaattttgtttatatttaaaaacggagggagta 26575653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 14498655 - 14498614
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||| |||||||||||| |||| |||||||||||||||||    
T  14498655 taaaaattcaattttacttatattaaaaaacggaggaagtat 14498614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2343383 - 2343343
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  2343383 tgaacctaaaaagtcaattttacttatatttaaaaacggag 2343343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3212283 - 3212243
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  3212283 tgaacctaaaaattcaattttacttatatttaaaaacggag 3212243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4027260 - 4027212
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||||||    
T  4027260 tgaatctaaaaactcaattttgcttatatttagaaacggaggaagtata 4027212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24936723 - 24936683
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggag 41  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  24936723 tgaatctaaaaaatcaattttgcttatatttaaaaacggag 24936683  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39976142 - 39976190
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  39976142 tgaatctaaaaaatcaattttgcttatgtttaaaaacggagggagtata 39976190  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2738936 - 2738982
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||||||||||  || |||| ||||||||||||||||    
T  2738936 tgaatctaaaaaatcaattttgtttatattaaaaaacggaggaagta 2738982  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4188034 - 4187988
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||| | |||||||||| |||||||||||||||| ||||    
T  4188034 tgaatctaaaaagtgaattttacttatatttaaaaacggagggagta 4187988  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30005911 - 30005870
Alignment:
Q  8 aaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    ||||| |||||||||||| |||||||||||||||| ||||||    
T  30005911 aaaaagtcaattttacttatatttaaaaacggagggagtata 30005870  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 42644171 - 42644212
Alignment:
Q  7 taaaaaatcaattttacttgtatttaaaaacggaggaagtat 48  Q
    |||||| |||||||||||| |||||||| |||||||||||||    
T  42644171 taaaaagtcaattttacttatatttaaagacggaggaagtat 42644212  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 25250260 - 25250296
Alignment:
Q  6 ctaaaaaatcaattttacttgtatttaaaaacggagg 42  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  25250260 ctaaaaagtcaattttacttatatttaaaaacggagg 25250296  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45833288 - 45833336
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagtata 49  Q
    |||||||||||| | || ||| ||| |||||||||||||||||||||||    
T  45833288 tgaatctaaaaagtaaaatttgcttatatttaaaaacggaggaagtata 45833336  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10185 - 10231
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||| |||||| ||| |||||||| ||||||||||||    
T  10185 tgaatctaaaaaattaattttgcttatatttaaagacggaggaagta 10231  T

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Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17922 - 17968
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    |||||||||||||| |||||| ||| |||||||| ||||||||||||    
T  17922 tgaatctaaaaaattaattttgcttatatttaaagacggaggaagta 17968  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8374 - 8420
Alignment:
Q  1 tgaatctaaaaaatcaattttacttgtatttaaaaacggaggaagta 47  Q
    ||||||||||||||||||||||||| |||||| | ||||||| ||||    
T  8374 tgaatctaaaaaatcaattttacttatatttagagacggagggagta 8420  T

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