View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13591_low_8 (Length: 375)

Name: NF13591_low_8
Description: NF13591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13591_low_8
NF13591_low_8
[»] chr7 (1 HSPs)
chr7 (26-364)||(30908037-30908390)
[»] chr8 (3 HSPs)
chr8 (24-78)||(24052904-24052959)
chr8 (21-78)||(26998678-26998736)
chr8 (22-78)||(45045451-45045508)
[»] chr4 (2 HSPs)
chr4 (36-78)||(36688376-36688418)
chr4 (36-76)||(31280422-31280462)
[»] chr6 (1 HSPs)
chr6 (36-85)||(11174051-11174100)
[»] chr2 (3 HSPs)
chr2 (20-79)||(2544423-2544483)
chr2 (36-76)||(7606234-7606274)
chr2 (19-78)||(15446849-15446909)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 26 - 364
Target Start/End: Complemental strand, 30908390 - 30908037
Alignment:
Q  26 catatacatctttaataaatgaacctaacaaatagatttttgtttataatagtagtcgaat---------------tatcttttcccaattatttatcat 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||                ||||||||||||||||||||||||    
T  30908390 catatacatctttaataaatgaacctaacaaatagatttttctttataatagtagctgaagggtatataaatatggtatcttttcccaattatttatcat 30908291  T
Q  111 tgtcctgttgctacacccagttgcttgaattcagaccatgatttcatactaatgtgtggccatttaattgaattactattgctaagaattcagagcatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30908290 tgtcctgttgctacacccagttgcttgaattcagaccatgatttcatactaatgtgtggccatttaattgaattactattgctaagaattcagagcatgt 30908191  T
Q  211 agattgttgcagtttcctattattatttttgcaatttagttgttttctcgtaaattattatatgtcttgttactgcacctgttcactattccaatcgtga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30908190 agattgttgcagtttcctattattatttttgcaatttagttgttttctcgtaaattattatatgtcttgttactgcacctgttcactattccaatcgtga 30908091  T
Q  311 attattattattgttgttgcgtggcagttctattgctgtgcaaatatattgatg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30908090 attattattattgttgttgcgtggcagttctattgctgtgcaaatatattgatg 30908037  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 24052904 - 24052959
Alignment:
Q  24 accatatacatc-tttaataaatgaacctaacaaatagatttttgtttataatagt 78  Q
    |||||||||||| |||| | ||||||||||| || |||||||||||||||||||||    
T  24052904 accatatacatcatttattcaatgaacctaaaaagtagatttttgtttataatagt 24052959  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 26998736 - 26998678
Alignment:
Q  21 tagaccatatacatc-tttaataaatgaacctaacaaatagatttttgtttataatagt 78  Q
    ||||||| ||||||| |||||||||| ||||||| ||||  ||||||||||||||||||    
T  26998736 tagaccaaatacatcatttaataaataaacctaaaaaattaatttttgtttataatagt 26998678  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 45045451 - 45045508
Alignment:
Q  22 agaccatatacatctttaata-aatgaacctaacaaatagatttttgtttataatagt 78  Q
    |||||||||||||| |||||  |||||| |||| | ||||||||||||||||||||||    
T  45045451 agaccatatacatcattaattgaatgaatctaaaatatagatttttgtttataatagt 45045508  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 36688418 - 36688376
Alignment:
Q  36 tttaataaatgaacctaacaaatagatttttgtttataatagt 78  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  36688418 tttattaaatgaacctaaaaaatagatttttgtttatagtagt 36688376  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 31280422 - 31280462
Alignment:
Q  36 tttaataaatgaacctaacaaatagatttttgtttataata 76  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  31280422 tttattaaatgaacctaaaaaataaatttttgtttataata 31280462  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 11174100 - 11174051
Alignment:
Q  36 tttaataaatgaacctaacaaatagatttttgtttataatagtagtcgaa 85  Q
    ||||||||||||| |||| |||| ||||||| |||||||||||| |||||    
T  11174100 tttaataaatgaatctaaaaaattgatttttatttataatagtaatcgaa 11174051  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 2544423 - 2544483
Alignment:
Q  20 atagaccatatacatc-tttaataaatgaacctaacaaatagatttttgtttataatagta 79  Q
    |||||||| ||||||| |||||| ||||||||||| || | ||||||||||||| ||||||    
T  2544423 atagaccaaatacatcatttaatgaatgaacctaaaaagttgatttttgtttatgatagta 2544483  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 7606234 - 7606274
Alignment:
Q  36 tttaataaatgaacctaacaaatagatttttgtttataata 76  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  7606234 tttattaaatgaacctaaaaaatagatctttgtttataata 7606274  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 15446849 - 15446909
Alignment:
Q  19 aatagaccatatacatc-tttaataaatgaacctaacaaatagatttttgtttataatagt 78  Q
    ||||||| ||||||||| |||||||||||||||||| ||||  ||||||  ||||||||||    
T  15446849 aatagactatatacatcatttaataaatgaacctaaaaaatgaatttttacttataatagt 15446909  T

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