View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13592_high_3 (Length: 397)
Name: NF13592_high_3
Description: NF13592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13592_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 43365633 - 43365961
Alignment:
| Q |
10 |
agaagaaccaaacacaactgaagaatctaagcttgtttcaactcttgacaatctcatgtttatcacagttggtggaagggaaagaactgagaaacaatac |
109 |
Q |
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| T |
43365633 |
agaagaaccaaacacaactgaagaatctaagcttgtttcaactcttgacaatctcatgtttatcacagttggtggaagggaaagaactgagaaacagtac |
43365732 |
T |
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| Q |
110 |
gagaaattgagcaaactctctggattttccaaatttcaagttgcttgccgtgctttcaacagtttgggagtgatggaattttataaatgaagtaattaca |
209 |
Q |
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| T |
43365733 |
gagaaattgagcaaactctctggattttccaaatttcaagttgcttgccgtgctttcaacagtttgggagtgatggaattttataaatgaagtaattaca |
43365832 |
T |
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| Q |
210 |
acaataactttgtattttaagatcaaagtgaaagaataaaggcctttttgtcaggtcatgttgttttacaatgtagtttcttgttataattcctgctttg |
309 |
Q |
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| T |
43365833 |
acaataactttgtattttaagat-------aaagaataaaggcctttctgttaggtcatgttgttttacaatgtagtttcttgttataattcctgctttg |
43365925 |
T |
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| Q |
310 |
atgttatgtaatgtttatgcaatttaagaaaagttg |
345 |
Q |
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| T |
43365926 |
atgttatgtaatgtttatgcaatttaagaaaagttg |
43365961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 3369399 - 3369267
Alignment:
| Q |
34 |
atctaagcttgtttcaactcttgacaatctcatgtttatcacagttggtggaagggaaagaactgagaaacaatacgagaaattgagcaaactctctgga |
133 |
Q |
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| T |
3369399 |
atctaagatggtttcaactgttgacaacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaatgtgga |
3369300 |
T |
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| Q |
134 |
ttttccaaatttcaagttgcttgccgtgctttc |
166 |
Q |
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| T |
3369299 |
ttttctaaacttcaagttgtttgtcgtgctttc |
3369267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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