View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13592_low_1 (Length: 533)
Name: NF13592_low_1
Description: NF13592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13592_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 54713910 - 54713732
Alignment:
| Q |
18 |
aacaaatacaaaattagttacaacatcaatgaagaattcaaatatagaacgttacggcaattgtttgggttcatcgttatattaaatttattccattaat |
117 |
Q |
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| T |
54713910 |
aacaaatacaaaattagttacaacatcaatgaagaattccaatatagaacgttacggcaattgtttgcgttcatcgttatattaaatttattccattaat |
54713811 |
T |
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| Q |
118 |
actaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
196 |
Q |
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| T |
54713810 |
actaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
54713732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 261 - 525
Target Start/End: Complemental strand, 54713461 - 54713192
Alignment:
| Q |
261 |
atttttcgagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaa |
359 |
Q |
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| T |
54713461 |
attttttgagtgattatacatgaac---caccctatgtggctaccactctttgtacaccttccacgtgtctaaaaaaaaatataaaataatcttatgaaa |
54713365 |
T |
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| Q |
360 |
-gtgccatctcataaaagaagacnnnnnnnn------ttaagtcccaaccctcagcttctctaaaaacggatctcttctctctccccaccaccatccatt |
452 |
Q |
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| T |
54713364 |
agtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttctctctccccaccaccatacatt |
54713265 |
T |
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| Q |
453 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcatctc |
525 |
Q |
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| T |
54713264 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctc |
54713192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 54679973 - 54679876
Alignment:
| Q |
99 |
ttaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
196 |
Q |
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| T |
54679973 |
ttaaatttattacattaatactacaatgctagatgaagggtcaattttactatgttgtactcaacatctgatgtgttaaatcatatctaccaatcaaa |
54679876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 54680216 - 54680135
Alignment:
| Q |
18 |
aacaaatacaaaattagttacaacatcaatgaagaattcaaatatagaacgttacggcaattgtttgggttcatcgttatat |
99 |
Q |
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| T |
54680216 |
aacaaatacaaaatcagttacaacatcaacgtagaattccaatatagaactttacggcaattgtttgggttcatcgttatat |
54680135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 54713517 - 54713475
Alignment:
| Q |
223 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
265 |
Q |
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| T |
54713517 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
54713475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 54679886 - 54679839
Alignment:
| Q |
217 |
taccaatcaaaagggttgaaatctagtttataaatattgcaacaatttt |
265 |
Q |
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| T |
54679886 |
taccaatcaaaagg-ttgaaatctagtttataaaaattgcaataatttt |
54679839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 268 - 520
Target Start/End: Original strand, 32971718 - 32971968
Alignment:
| Q |
268 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaatatataaaataatcttatgaaagtgccatc |
367 |
Q |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||| | |
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| T |
32971718 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacacctttcacatgtctaagaaaaatataaa-taatcttatgaaagtgccagc |
32971813 |
T |
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| Q |
368 |
tcataaaagaagacnnnnnnnn-ttaagtcccaaccctcagcttctctaaaaacggatctc--ttctctctccccaccaccatccattgccatcgccgca |
464 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||| ||||| ||||||| |
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| T |
32971814 |
tcataaaagaagacaaaaaaaaattaagtcccaaccctt-gcttctctaaaaacagatctctcttctctctcccaaccgccatccactgccaccgccgca |
32971912 |
T |
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| Q |
465 |
aactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttc |
520 |
Q |
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| T |
32971913 |
aactccgaccacccctccgccccaactccgatttcaacaactcaactctctctttc |
32971968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 268 - 525
Target Start/End: Complemental strand, 41665254 - 41664990
Alignment:
| Q |
268 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaagtgccat |
366 |
Q |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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| T |
41665254 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacaccttccacatgtctaaaaaaaaatataaaataatcttatgaaagtgtcag |
41665158 |
T |
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| Q |
367 |
ctcataaaagaagacnnnnnnnn--------ttaagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccat |
457 |
Q |
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||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||| ||||| |
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| T |
41665157 |
ctcataaaagaagacaaaaaaaaataaaaaattaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccac |
41665058 |
T |
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| Q |
458 |
cgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcatctc |
525 |
Q |
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| T |
41665057 |
tgccgcaaactccgaccacccctccgccccagctccgatttcaacaactcaactctctctttcttctc |
41664990 |
T |
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