View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13593_low_1 (Length: 673)
Name: NF13593_low_1
Description: NF13593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13593_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 321 - 652
Target Start/End: Complemental strand, 529818 - 529471
Alignment:
| Q |
321 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaacaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
420 |
Q |
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| T |
529818 |
gagaaaaggttatataccatgatgttcccgtggaacgttggtggctgttctaaaaaaaagacgatcgctttgtcgatgtaatgtagctacccagcgttta |
529719 |
T |
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| Q |
421 |
gctccaaaagcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaaaat |
520 |
Q |
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| T |
529718 |
gctccaaatgcaagtccagaattaactagaggtttatatatattttgcaccacctgatcatcaacttctacattttcaatccatgtaacctgttaaacat |
529619 |
T |
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| Q |
521 |
taacaagacaataaataattgataaaattaactatactaatccaca----------------ttaatattattttaggtgaaggtgaaatgtggtaagac |
604 |
Q |
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| T |
529618 |
taacaagacaacaaataattgataaaattaactatactaatccacattaaaataatacaacattaatattattttaggtgaaggtgaaatgtggtaagac |
529519 |
T |
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| Q |
605 |
cttagtgagaccatttgggagtgtctcaatcaaacaaccagagggtct |
652 |
Q |
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| T |
529518 |
cttagtgagaccatttgggagggtctcaatcaaacaaccagagggtct |
529471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 530132 - 529870
Alignment:
| Q |
7 |
tcgaagaatatcaaacaccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcg |
106 |
Q |
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| T |
530132 |
tcgaagaaaatcaaacaccctccttggaggaactggaagccaaaaagaagtagcagcacttagcactacactgacgggtttgtcaatgctcgattcatcg |
530033 |
T |
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| Q |
107 |
gtatatctttttgtcatgaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctag |
206 |
Q |
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| T |
530032 |
atatatctttttgtcatgaccattacaacctccggtccgtttccaggtacctttgtccaagcatgtgttgtagaagaaccaatacttgtactaaagctag |
529933 |
T |
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| Q |
207 |
ctaccaacctttccgcaagattcaatatacttttctttccctcaggagtcaatctcactgtac |
269 |
Q |
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| T |
529932 |
ctaccaacctttccgcaagattcaatatacttttctttccctcaggagtcaatctcactgtac |
529870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 16828413 - 16828377
Alignment:
| Q |
30 |
ttggaggaactggaagccaaaaagaagtagcagcact |
66 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |
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| T |
16828413 |
ttggtggaacaggaagccaaaaagaagtagcagcact |
16828377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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