View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13593_low_2 (Length: 538)
Name: NF13593_low_2
Description: NF13593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13593_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 5052540 - 5053057
Alignment:
| Q |
1 |
tggattgtgaaatactctactagtatttcgatttttaagtgtatgttcatatgtttgtgatattcagatttgttttccctttaaatattgaaaagattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5052540 |
tggattgtgaaatactctactagtatttcgatttttaagtgtatgttcatatgtttgtgatattcagatttgttttccctttaaatattgaaaagcttct |
5052639 |
T |
|
| Q |
101 |
agtagttgtgaatctatggtgtgttacaacttacaagtactagtacttcactgttttacaagtaccctcacttcaaagatgctgagtgctgaaattatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5052640 |
agtagttgtgaatctatggtgtgttacaacttacaagtactagtacttcactgttttacaagtaccctcacttcaaagatgctgagtgttgaaattatag |
5052739 |
T |
|
| Q |
201 |
gaattgatattttactatggtaaattcatattaatttatgctaccatccaacttcggttcgttagtttgccttgttcgagnnnnnnnnntatgttaccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||| |
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| T |
5052740 |
gaattgatattttactatggtaaattcatattaatttatgctaccatccaatttcggttcattagtttgccttgttcgag-aaaaaaaatatgctaccat |
5052838 |
T |
|
| Q |
301 |
ctgtttcaaattgtataagtatctattttttctccctatatattaagaaaattttgtagtgaacttaatgcgtctaatttgtgtgaagacctttctaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5052839 |
ctgtttcaaattgtataagtatctattttttctccctatatattaagaaaattttgtagtgaacttgatgcgtctaatttgtgtgaagacctttctaaaa |
5052938 |
T |
|
| Q |
401 |
tactctttgtatattaatgtttttctggaacatcctttgcatagcagaactgtttcatttcccgccttactcaagaagtggagcatcgtgtgtgtaataa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5052939 |
tactctttgtatattaatgtttttctggaacatcctttgcatagcagaactgtttcatttcccaccttactcaagaagtggagcatcgtgtgtgtaataa |
5053038 |
T |
|
| Q |
501 |
tcatgcgtttaaagtaatc |
519 |
Q |
| |
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|||| |||||||||||||| |
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| T |
5053039 |
tcattcgtttaaagtaatc |
5053057 |
T |
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