View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13593_low_3 (Length: 414)
Name: NF13593_low_3
Description: NF13593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13593_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 38110882 - 38110520
Alignment:
| Q |
13 |
aaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacat |
112 |
Q |
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| T |
38110882 |
aaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacat |
38110783 |
T |
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| Q |
113 |
gtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatatcatatcatatcatactttct |
212 |
Q |
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| T |
38110782 |
gtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatat----------catactttct |
38110693 |
T |
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| Q |
213 |
ttttggtgttaggtatcatatacttgttgaattagctctatatatggcgatagagggattgtctggtaagaatattctttggatgattgattgattgatt |
312 |
Q |
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| T |
38110692 |
ttttggtgttaggtatcatatacttcttgaattagctc----tatggcgatagaggtattgtctggtaagaatattctttgga--------taattgatt |
38110605 |
T |
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| Q |
313 |
gcaggctgtgctgacaagaaataacactataaatggggttttatataaggatgatccaaccattttcgcttgggagcttataaac |
397 |
Q |
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| T |
38110604 |
gcaggctgtgctgacaagaaataacactataaatggggtgttatataaggatgatccaaccattttcgcttgggagcttataaac |
38110520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 38085782 - 38085615
Alignment:
| Q |
14 |
aaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatg |
113 |
Q |
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| T |
38085782 |
aaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagtgggcaaaagaacgtggtcaaaata |
38085683 |
T |
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| Q |
114 |
tcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggta |
181 |
Q |
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| T |
38085682 |
tcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggta |
38085615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 38142447 - 38142280
Alignment:
| Q |
14 |
aaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatg |
113 |
Q |
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| T |
38142447 |
aaatatggagtgaaacttatactgagcttagtgaataattggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatg |
38142348 |
T |
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| Q |
114 |
tcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggta |
181 |
Q |
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| T |
38142347 |
tcaaaattgaagatgacttctttattaatcctcttgttaagcaatactacaaaaacaatgttaaggta |
38142280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 38155797 - 38155626
Alignment:
| Q |
10 |
aagaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaa |
109 |
Q |
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| T |
38155797 |
aagaaaatatggagtgaaacttatactgagcttagtgaataattggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaa |
38155698 |
T |
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| Q |
110 |
catgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggta |
181 |
Q |
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| T |
38155697 |
aatgtcaaaattgaagatgacttctttattaaccctcttgttaagcaatactacaaaaacaatgttaaggta |
38155626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 38142197 - 38142112
Alignment:
| Q |
308 |
tgattgcaggctgtgctgacaagaaataacactataaatggggttttatataaggatgatccaaccattttcgcttgggagcttat |
393 |
Q |
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| T |
38142197 |
tgattgcaggctgtgctgacaagaaagaacaccattaatggagtattgtataaggatgacccaaccatttttgcatgggagcttat |
38142112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 38090732 - 38090602
Alignment:
| Q |
47 |
aataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccg |
146 |
Q |
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| T |
38090732 |
aataattggaataattttggaggcaaaaacaaatatgttcaatgggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctc |
38090633 |
T |
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| Q |
147 |
ttgttaagcaatactacaaaaaccatgttaa |
177 |
Q |
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| T |
38090632 |
ttgttaagcaatactacaaaaatcatgttaa |
38090602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 393
Target Start/End: Complemental strand, 38155350 - 38155265
Alignment:
| Q |
308 |
tgattgcaggctgtgctgacaagaaataacactataaatggggttttatataaggatgatccaaccattttcgcttgggagcttat |
393 |
Q |
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| T |
38155350 |
tgattgcaggccgtgctgacaagaaagaacaccataaacggggtattatacaaagatgatccaactatttttgcatgggagcttat |
38155265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 393
Target Start/End: Complemental strand, 38085320 - 38085234
Alignment:
| Q |
307 |
ttgattgcaggctgtgctgacaagaaataacactataaatggggttttatataaggatgatccaaccattttcgcttgggagcttat |
393 |
Q |
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| T |
38085320 |
ttgattacaggctgtgctgacaagaaagaacaccattagtggagtgttatacaaggatgacccaactatttttgcttgggagcttat |
38085234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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