View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13593_low_6 (Length: 272)
Name: NF13593_low_6
Description: NF13593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13593_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 32688971 - 32688711
Alignment:
| Q |
7 |
caggctagtgcctcgtgcgcgatgcgcacattcatttcctgaaaaagtggaatatgcaaattctatagaagggacacgatcagaattgagttgaggatnn |
106 |
Q |
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| T |
32688971 |
caggctagtgcctcgtgcgcgatgcgcgcattcatttcctgaaaaagtggaatatacaaattctatagaacggacacgatcaaaattgagttgaggataa |
32688872 |
T |
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| Q |
107 |
nnnnntacacagaaaagggtcagaagttcattctcaaatgtagtggaggctagagaaacaacttggaaagaagattccaccaacctcttcatcatctatt |
206 |
Q |
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| T |
32688871 |
aaaaatacacagaaaagggtcagaaattcattctcaaatgtagtgaaggatagaaaaacaacttggaaacaagattccaccaacctcttcatcatctgtt |
32688772 |
T |
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| Q |
207 |
catgtgtgatttcttaatcttgtagccatgtctcttttgattatgagtagttagatttctt |
267 |
Q |
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| T |
32688771 |
catgtgtaatttcttaatcttgtagccatgtctcttttgattatgagtagttagatttctt |
32688711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 15692053 - 15691952
Alignment:
| Q |
161 |
gaaacaacttggaaagaagattccaccaacctcttcatcatctattcatgtgtgatttcttaatcttgtagccatgtctcttttgattatgagtagttag |
260 |
Q |
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| T |
15692053 |
gaaacaacttggaaacaagatttcatcaaccacttcatcatctatt-----gtaatttcttaatctagttgtcatgtctcttttaattatgagtagctag |
15691959 |
T |
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| Q |
261 |
atttctt |
267 |
Q |
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| T |
15691958 |
aattctt |
15691952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 10068425 - 10068353
Alignment:
| Q |
177 |
aagattccaccaacctcttcatcatctattcatgtgtgatttcttaatcttgtagccatgtctcttttgatta |
249 |
Q |
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| T |
10068425 |
aagattccatcaacttcttcatcatccattcatgtgtaaattcctaatcttgtttccatgtctcttttaatta |
10068353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 20279805 - 20279752
Alignment:
| Q |
203 |
tattcatgtgtgatttcttaatcttgtagccatgtctcttttgattatgagtag |
256 |
Q |
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| T |
20279805 |
tattcatgtgtaatttcttaatcttgttgtcatgtctcttttgattatgagtag |
20279752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 33308978 - 33308905
Alignment:
| Q |
194 |
ttcatcatctattcatgtgtgatttcttaatcttgtagccatgtctcttttgattatgagtagttagatttctt |
267 |
Q |
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| T |
33308978 |
ttcatcatctattcatgtataatttcttaatcttgttgccatgcgcattttggttatgaatagctagatttctt |
33308905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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