View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_1 (Length: 548)
Name: NF13594_low_1
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 523
Target Start/End: Original strand, 45603974 - 45604497
Alignment:
| Q |
6 |
agtaattagttcttaatctaaaaatgaaattacatgtgtgtgcacaaaagcaactctagcaaaataacaaataatttcatgtgtatatggtaaccctgtg |
105 |
Q |
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| T |
45603974 |
agtaattagttcttaatctaaaaatgaaattacatgtgtgtgcacaaaagcaactctaacaaaataacaaataatttcatgtgtatatggtaaccctgtg |
45604073 |
T |
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| Q |
106 |
gatattgaaatcatttgaatttcgtaggaggaatatagtaaatacaatacatgacatacataattcagtatgtataattcaaagccctcaaacgtacatt |
205 |
Q |
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| T |
45604074 |
gaaattgaaatcatttgaatttggtaggaggaatatagtaaatacaatacattacatacataattcagtatgtataattcaaagccctcaaacgtacatt |
45604173 |
T |
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| Q |
206 |
gcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatctgtgaat |
305 |
Q |
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| T |
45604174 |
gcatcattgcttagattgaaattgttacttaaatcaactccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatctgtgaat |
45604273 |
T |
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| Q |
306 |
tgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtccttcttgcattgtaacttcttgaaaagctgaattttgatc |
405 |
Q |
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| T |
45604274 |
tgaacatctcagtggctgaaatgttagtcacactattatgaaactctccattgaagggtccttcttgcattgtaacttcttgaaaagctgaattttgatc |
45604373 |
T |
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| Q |
406 |
aaatccatttctcatgaccaaagattcaactgaatttgaagagttcc------tattattaacatgatccaatgaaagccattcagcaaacaatagtttt |
499 |
Q |
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| T |
45604374 |
aaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattattattaacatgatccaatgaaagccattcagcaaacaatagtttt |
45604473 |
T |
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| Q |
500 |
ggtaaggtgctttgatgagtctct |
523 |
Q |
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| T |
45604474 |
ggtaaggtgctttgatgagtctct |
45604497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 504
Target Start/End: Complemental strand, 20070264 - 20070142
Alignment:
| Q |
382 |
ttcttgaaaagctgaattttgatcaaatccatttctcatgaccaaagattcaactgaatttgaagagttcctattattaacatgatccaatgaaagccat |
481 |
Q |
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|||||||||| | ||||||||||| | |||||| ||| ||||||||| ||| |||||||| |||||| | | ||| || ||||| | ||||||||| |
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| T |
20070264 |
ttcttgaaaaattaaattttgatcatagccatttttcaagaccaaagaatcatctgaatttagagagttgcaaccatttacttgatctagtgaaagccac |
20070165 |
T |
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| Q |
482 |
tcagcaaacaatagttttggtaa |
504 |
Q |
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| T |
20070164 |
tcagaaaataaaagttttggtaa |
20070142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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