View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_2 (Length: 524)
Name: NF13594_low_2
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 69 - 464
Target Start/End: Original strand, 30993333 - 30993730
Alignment:
| Q |
69 |
caagggcagcttcagtgagagtctaactcatttagctcaattaaacacatttttgttatttattctttctttattaatttgattagtgtacattgaattt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30993333 |
caagggcagcttcagtgagagtctaactcatttagctcaattaaacacatttttgttatttattctttctttattaatttgattagtgtacattgaattt |
30993432 |
T |
|
| Q |
169 |
tgactttcattcttggttggcacacaacaacactctgacatactcacatgtgtagtcatattgctattgatttacacgtgtttagcaatttgggatgcat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
30993433 |
tgactttcattcttggttggcacacaacaacactctgacatactcacatgtgtagccatgttgctattgatttacacgtgtttaacaatttgggatgcat |
30993532 |
T |
|
| Q |
269 |
cttgtgtccttaattgtgattatttattattatgactaacaaatgaaacaagttttggggttcatcaccaatttccaacaccgtaatatcctttatataa |
368 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30993533 |
cttgtgtccttaattgtgattatttattattatggttaacaaatgaaacaagttttggggttcatcaccaatttccaacaccgtaatatcctttatataa |
30993632 |
T |
|
| Q |
369 |
tgagtacatttatgtccaaaactttagtataaaaattaggactgc--cagatgttatgtcttaactggtaaaagatgaataaaattcatataagacga |
464 |
Q |
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| T |
30993633 |
tgagtacatttatgtccaaaactttagtataaaaattaggactgcctcagatgttatgtcttaactggtaaaagatgaataaaatttatataagacga |
30993730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 30989924 - 30989990
Alignment:
| Q |
9 |
acatcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatggcaagggc |
75 |
Q |
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| T |
30989924 |
acatcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatgccaagggc |
30989990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 30986713 - 30986780
Alignment:
| Q |
15 |
tcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatggcaagggcagcttca |
82 |
Q |
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||||||||||||||| | | |||||||||||||| ||||||||||||| || |||||||||||||| |
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| T |
30986713 |
tcaacacacttaatatccaatcttaatcaaacatcatcaaaacaactctaacatcaagggcagcttca |
30986780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 146 - 459
Target Start/End: Complemental strand, 3689464 - 3689150
Alignment:
| Q |
146 |
tttgattagtgtacattgaattttgactttcattcttggttggcacacaacaacactctgacatactcacatgtgtagtcatattgctattgatttacac |
245 |
Q |
| |
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|||||||||| ||| || ||||||||||||| | |||| |||||||||||| |||| ||| ||||||||| |||||| ||| | |||| |||||| ||| |
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| T |
3689464 |
tttgattagtatactttaaattttgactttcgtacttgattggcacacaactacacattgatatactcacacgtgtagccatgtggctactgatttgcac |
3689365 |
T |
|
| Q |
246 |
gtgtttagcaatttgggatgcatcttgtgtccttaattgtgattatttattattatgactaacaaatgaaacaagttttggggttcatcaccaatttcca |
345 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||||||| |
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| T |
3689364 |
gtgtttagcaatttaggatgcatcttgtgtccttaattgtgattatttattattatagttggcaaatgaagaaagttttgggattcatcaccaatttcca |
3689265 |
T |
|
| Q |
346 |
acaccgtaatatcctttatataatgagtacatttatgtccaaaactttagtataaaaattaggactgc--cagatgttatgtcttaactggtaaaagatg |
443 |
Q |
| |
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|||||||||||||||| |||||||||| ||||| |||| |||| |||||||||||||||||||| | |||||| ||||| |||||| ||||| ||| |
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| T |
3689264 |
acaccgtaatatccttgatataatgagggcatttttgtctaaaa-tttagtataaaaattaggaccacctcagatgctatgttttaacttataaaatatg |
3689166 |
T |
|
| Q |
444 |
aataaaattcatataa |
459 |
Q |
| |
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| |||||||||||||| |
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|
| T |
3689165 |
agtaaaattcatataa |
3689150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 22916869 - 22916796
Alignment:
| Q |
9 |
acatcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatggcaagggcagcttca |
82 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||| |
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| T |
22916869 |
acatcatcaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggcagcttca |
22916796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 22902039 - 22901965
Alignment:
| Q |
9 |
acatcatcaa-cacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatggcaagggcagcttca |
82 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||| |
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| T |
22902039 |
acatcatcaaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggcagcttca |
22901965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 22884141 - 22884085
Alignment:
| Q |
9 |
acatcatcaa-cacacttaatacctagtcttaatcaaacatgatcaaaacaactcca |
64 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| |
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|
| T |
22884141 |
acatcatcaaacacacttaatacctagttttaatcaatcatcatcaaaacaactcca |
22884085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 8988418 - 8988368
Alignment:
| Q |
11 |
atcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactc |
62 |
Q |
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|||||||||||||||||||| |||| | |||||||||| ||||||||||||| |
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| T |
8988418 |
atcatcaacacacttaatacatagtat-aatcaaacatcatcaaaacaactc |
8988368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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