View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_3 (Length: 512)
Name: NF13594_low_3
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 311 - 469
Target Start/End: Original strand, 28586300 - 28586461
Alignment:
| Q |
311 |
tatcaagaacaagaagattcattctttcaaggattcacaattaaaa-tctcatctcataaatttatcaatgtataaaccatttcttacaaatcaaacaaa |
409 |
Q |
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| T |
28586300 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaaatctcatctcataaatttatcaatgcataaatcatttcttacagatcaaatgaa |
28586399 |
T |
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| Q |
410 |
tat--tgagtcatttctgatgatcaagaagttctgtttgtgatgagtttggactaaaagaaa |
469 |
Q |
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| T |
28586400 |
tatattgagtcatttctgatgatcaagaaattctgtttgtgatgagtttgggctaacagaaa |
28586461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 311 - 469
Target Start/End: Complemental strand, 28403472 - 28403310
Alignment:
| Q |
311 |
tatcaagaacaagaagattcattctttcaaggattcacaattaaaatctcatctcataaatttatc--aatgtataaaccatttcttacaaatcaaa--c |
406 |
Q |
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| T |
28403472 |
tatcaagaacaagaagattcattctttcaaggattcacaatcaaaatctcatctcataaatttatcaaaatgcataaatcatttcttacagatcaaatga |
28403373 |
T |
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| Q |
407 |
aaatattgagtcatttctgatgatcaagaagttctgtttgtgatgagtttggactaaaagaaa |
469 |
Q |
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| T |
28403372 |
atatattgagtcatttctgatgatcaagaaattctgtttgtgatgagtttgggctaacagaaa |
28403310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 28403798 - 28403707
Alignment:
| Q |
10 |
catcatcaccaagatattttaacaatgtctttaatcctagttcttatatcatacgtagctcgctcaaaagaccttatgcctgtagcatcatg |
101 |
Q |
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| T |
28403798 |
catcatcaccaagatattttaacaatgtctttaatcctagttcttatatcatacgtagctcgctcaaaagaccttatgcctgtagcatcatg |
28403707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 28585998 - 28586089
Alignment:
| Q |
10 |
catcatcaccaagatattttaacaatgtctttaatcctagttcttatatcatacgtagctcgctcaaaagaccttatgcctgtagcatcatg |
101 |
Q |
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| T |
28585998 |
catcatcaccaagatattttaacaatgtctttaatcctagttcttatatcatacgtagctcgctcaaaagaccttatgcctgtagcatcatg |
28586089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 285
Target Start/End: Complemental strand, 28403685 - 28403488
Alignment:
| Q |
98 |
catgaatacaatgcaacatatgtcaaaatcaactgtcacaagttctttaatata-acac-tggttcagataaaaaactgtaattatcttattgagtat-- |
193 |
Q |
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| T |
28403685 |
catgaatgcaatacaacatatgacaaaaccaaccatcacaagttctttaatatacacaaatggttcagatcaaaaactgtaattatcatattgattattg |
28403586 |
T |
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| Q |
194 |
------aaataattgttctgagaataaaatggaataaactatgaccttagaacatcaagatcaaaggaaacatattaattatacaaaagggagtacat |
285 |
Q |
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| T |
28403585 |
aatattaaataattgttctgagaataaaatggaatagactataaccttagagcatcaatatcacaggaaacatatttattatacaaaagggagtacat |
28403488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 28586111 - 28586268
Alignment:
| Q |
98 |
catgaatacaatgcaacatatgtcaaaatcaactgtcacaagttctttaatata-acac-tggttcagataaaaaactgtaattatcttattgagtat-- |
193 |
Q |
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| T |
28586111 |
catgaatgcaatacaacatatgacaaaaccaaccatcacaagttctttaatatacacaaatggttcagatcaaaaactgtaattgtcatattgattattg |
28586210 |
T |
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| Q |
194 |
------aaataattgttctgagaataaaatggaataaactatgaccttagaacatcaa |
245 |
Q |
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| T |
28586211 |
aatattaaataattgttctgagaataaaatggaatagactataaccttagagcatcaa |
28586268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 8047370 - 8047415
Alignment:
| Q |
26 |
ttttaaca-atgtctttaatcctagttcttatatcatacgtagctc |
70 |
Q |
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| T |
8047370 |
ttttaacatatgtctttaatcctagttcttatatcatatgtagctc |
8047415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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