View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_4 (Length: 510)
Name: NF13594_low_4
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 38620017 - 38620504
Alignment:
| Q |
9 |
acatcatcaatcatcaactctttttccagctgaactcgtgttgatttcaagatatcctgtgatgataggaatgaaaaagaaacaattattcaaccccttt |
108 |
Q |
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| T |
38620017 |
acatcatcaatcatcaactctttttccagctgaactcgtgttgatttcaagatatcctgtgatgataggaatgaaaaagaaacaattattcaaccccttt |
38620116 |
T |
|
| Q |
109 |
gaaagagcctcttcaataaagcacacaaaattttacatatgaacatcaattttgaaatccaggactaaggttaaaaggaactcatgaatcatataacaag |
208 |
Q |
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| T |
38620117 |
gaaagagcctcttcaataaagcacacaaaattttacatatgaacatcaattttgaaatccaggactaaggttaaaaggaactcatgaatcatataacaag |
38620216 |
T |
|
| Q |
209 |
tagacggattctcacgttaaactgcatgtacgtagcgtttgtctccaaccactgtttgtccataaccacaaatgccacacaataaagcaaatcaaatgcc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38620217 |
tagacggattctcacgttaaactgcatgtacgtagcgtttgtctccaaccactgtttatccataaccacaaatgccacacaataaagcaaatcaaatgcc |
38620316 |
T |
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| Q |
309 |
cactcattttctgcaaatgttgaga--atatcataagaatggttataatgcagaggacgaaattgtgatcaatttaggttttccttctcaaaacaaaata |
406 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38620317 |
cactcattttctgcaaatgttgagaatatatcataagaatggttataatgcagaggacgaaattgtgatcaatttaggttttccttctcaaaacaaaata |
38620416 |
T |
|
| Q |
407 |
aaacaatagtttctaattcttacctgacagcatttgtagaaaaactgttcttatgaaagtcctgggtttggctgcaagtgaagaaact |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38620417 |
aaacaatagtttctaattcttacctgacagcatttgtagaaaaactgttcttatgaaagtcctgggtttggctgcaagtgaagaaact |
38620504 |
T |
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