View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_5 (Length: 453)
Name: NF13594_low_5
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 49703582 - 49703179
Alignment:
| Q |
19 |
ccacgagcatcaggcataacgggtgcactttgaaacgacgacacattaggcgtaccatcttctggtattggactaacaggtgctatttgtttgttttctt |
118 |
Q |
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| T |
49703582 |
ccacgagcatcaggcataacgggtgcactttgaaacgacgacacattaggcgtaccatcttctggtattggactaacaggtgctgtttgtttgttttctt |
49703483 |
T |
|
| Q |
119 |
taatgttttggaatatattttgaatttcgtcgtggccttgattttctgccaaagcccttggagtccagccatgatcatcttgcatatcaacttcagctcc |
218 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49703482 |
taatgttttggaatatatttttaatttcatcgtggccttgattttctgccaaagcccttggagtccagccatgatcatcttgcatatcaactttagctcc |
49703383 |
T |
|
| Q |
219 |
taggtccaaaaggaactttaccatctctacatttctgtcacttactgctttatgcagggcagtgattccgctcatttcgggttttgtcacatccacgccg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49703382 |
taggtccaaaaggaactttaccatctctacatttctgtcacttactgctttatgcagggcagtgattccgctcatttcgggttttgtcacatccacaccg |
49703283 |
T |
|
| Q |
319 |
agttctttgagttccttaagcaattcaatgctatttttatcaactgcagagcatgctagatgccctgcatcaacacaaaatatgtctgcacccttgtcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49703282 |
agttctttgagttccttaagcaattcaatgctatttttatcaactgcagagcatgctagatgccctgcatcaacacaaaatatgtctgcacccttgtcta |
49703183 |
T |
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| Q |
419 |
tgag |
422 |
Q |
| |
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|||| |
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| T |
49703182 |
tgag |
49703179 |
T |
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