View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13594_low_6 (Length: 330)
Name: NF13594_low_6
Description: NF13594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13594_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 47539846 - 47539967
Alignment:
| Q |
16 |
atcccaactaggcgagtagattggtccagatctttaagataaaaacaaaaatatatttagattctttcatgcatatttttgttcttatgcacaaattttt |
115 |
Q |
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| T |
47539846 |
atcccaactaggcgagtagattggtccagatctttaagataaaaacaaaaatatatttagattctttcatgcatatttttgttcttatgcacaaattttt |
47539945 |
T |
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| Q |
116 |
cgttaaatggccatgtgacatc |
137 |
Q |
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| T |
47539946 |
ctttaaatggccatgtgacatc |
47539967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 47540023 - 47540144
Alignment:
| Q |
193 |
gtttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
47540023 |
gtttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagagcacgtagtaaggacaatatccttgtcttgaa |
47540122 |
T |
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| Q |
293 |
gtgtgacattgccactcatatc |
314 |
Q |
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|||||||||||||||||||||| |
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| T |
47540123 |
gtgtgacattgccactcatatc |
47540144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 47541309 - 47541426
Alignment:
| Q |
193 |
gtttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| || |||||||||||| ||||||||| ||||| |
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| T |
47541309 |
gtttaagttagaagaaaacaatgaacaagtcggtaaaactttggaattgcaatggtattattcggagaccatgtagtaaggacagtatccttgtcttgaa |
47541408 |
T |
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| Q |
293 |
gtgtgacattgccactca |
310 |
Q |
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|||||||||||||||||| |
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| T |
47541409 |
gtgtgacattgccactca |
47541426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 47541143 - 47541251
Alignment:
| Q |
24 |
taggcgagtagattggtccagatctttaagataaaaacaaaaatatatttagattctttcatgcatatttttgttcttatgcacaaatttttcgttaaat |
123 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||| |
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| T |
47541143 |
taggcgagtagattggtccgg-tctataagataaaaacaaaaatatatttggattctttcatgcatatttttgtacttatgcacagatttttctttaaat |
47541241 |
T |
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| Q |
124 |
ggccatgtga |
133 |
Q |
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| T |
47541242 |
gaccatgtga |
47541251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 47547499 - 47547613
Alignment:
| Q |
197 |
aagttagaagaaaacaatgaacaag-tcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaagtg |
295 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||| || ||| ||||| |||||||| || |||||| ||||||||||||||| |||||||| |
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| T |
47547499 |
aagttagaagaaaacaatgaacgaggtcggtaacactttggaagggaaatagtacctttcggagaacatgtagtagggacaatatccttgtcttgaagtg |
47547598 |
T |
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| Q |
296 |
tgacattgccactca |
310 |
Q |
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||||||||||||||| |
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| T |
47547599 |
tgacattgccactca |
47547613 |
T |
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