View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13595_high_2 (Length: 305)

Name: NF13595_high_2
Description: NF13595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13595_high_2
NF13595_high_2
[»] chr6 (11 HSPs)
chr6 (14-286)||(33414568-33414840)
chr6 (37-234)||(31564920-31565117)
chr6 (14-291)||(33258194-33258473)
chr6 (14-209)||(33269541-33269740)
chr6 (130-291)||(33293090-33293251)
chr6 (14-286)||(33395052-33395326)
chr6 (64-291)||(33278972-33279194)
chr6 (25-141)||(33384040-33384156)
chr6 (188-280)||(28872999-28873091)
chr6 (67-191)||(33280358-33280482)
chr6 (27-71)||(33293034-33293078)
[»] scaffold0428 (3 HSPs)
scaffold0428 (14-291)||(2315-2594)
scaffold0428 (64-291)||(15059-15281)
scaffold0428 (67-191)||(13771-13895)
[»] chr2 (1 HSPs)
chr2 (14-291)||(17447703-17447981)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 33414568 - 33414840
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||    
T  33414568 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaat 33414667  T
Q  114 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatg 213  Q
    |||||||| |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||  ||    
T  33414668 tagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctg 33414767  T
Q  214 agatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 286  Q
    ||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  33414768 agatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac 33414840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  37 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  137 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 234  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 33258194 - 33258473
Alignment:
Q  14 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  113 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 211  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  212 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33258394 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 33258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||    
T  33269541 gaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaat 33269640  T
Q  114 tagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttt 209  Q
    ||||||||  |||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| |||||||||||||||||||||||    
T  33269641 tagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 130 - 291
Target Start/End: Original strand, 33293090 - 33293251
Alignment:
Q  130 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggct 229  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| ||||||||||||||||  |||| ||||||| |  ||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  230 tttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 291  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||    
T  33293190 tttcaagatcaccttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt 33293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 33395052 - 33395326
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttca 111  Q
    |||||||||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| |||||||||    
T  33395052 gaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttca 33395151  T
Q  112 attagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 211  Q
    || ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||| |      
T  33395152 atcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttc 33395251  T
Q  212 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac 286  Q
    | || |||| ||| | |||||||||||||||||  ||||||||    ||||||||||||||||| ||||| ||||    
T  33395252 taaggtatgattgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac 33395326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 291
Target Start/End: Original strand, 33278972 - 33279194
Alignment:
Q  64 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 163  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  164 caactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagcttt 263  Q
     | ||    | ||||||||||||||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || ||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 33279166  T
Q  264 cttacagtccatcatccctgcacaggtt 291  Q
     |||||||||||| |||| |||| ||||    
T  33279167 attacagtccatcgtcccagcaccggtt 33279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  25 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 124  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  125 tgtgtgaatcgtgaatg 141  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  188 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 280  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  67 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  167 ctcgtcttccggatttcttgtcagc 191  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  27 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 71  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 2315 - 2594
Alignment:
Q  14 gaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 112  Q
    |||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  113 ttagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccctttttga 211  Q
    ||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  212 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2515 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 291
Target Start/End: Complemental strand, 15281 - 15059
Alignment:
Q  64 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 163  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  164 caactcgtcttccggatttcttgtcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagcttt 263  Q
     | ||    | ||||||||||||||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || ||    
T  15181 tagct----tgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcatt 15087  T
Q  264 cttacagtccatcatccctgcacaggtt 291  Q
     |||||||||||| |||| |||| ||||    
T  15086 attacagtccatcgtcccagcaccggtt 15059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  67 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 166  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  167 ctcgtcttccggatttcttgtcagc 191  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 17447981 - 17447703
Alignment:
Q  14 gaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaat 113  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| ||||||    
T  17447981 gaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaat 17447882  T
Q  114 tagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-ccctttttgat 212  Q
    |||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||  |    
T  17447881 tagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttct 17447782  T
Q  213 gagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt 291  Q
    ||| |||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| ||||    
T  17447781 gaggtatgcttgcgccttttcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt 17447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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