View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13595_low_1 (Length: 408)
Name: NF13595_low_1
Description: NF13595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13595_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 40801206 - 40801409
Alignment:
| Q |
18 |
agcatcactgttgcaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagag |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801206 |
agcatcactgttacaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagag |
40801305 |
T |
|
| Q |
118 |
tgaaaattggtgtcagtgtggagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaattgtaaca |
217 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801306 |
tgaaaattggtgtcaatgtggagtaactgccatcaactaagatacacagagaggtttcttaatagttttaaatgtatgctacaagaatttaattgtaaca |
40801405 |
T |
|
| Q |
218 |
aggg |
221 |
Q |
| |
|
|||| |
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|
| T |
40801406 |
aggg |
40801409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 297 - 408
Target Start/End: Original strand, 40801555 - 40801666
Alignment:
| Q |
297 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801555 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacagagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
40801654 |
T |
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| Q |
397 |
acaacaatgttt |
408 |
Q |
| |
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|||||||||||| |
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| T |
40801655 |
acaacaatgttt |
40801666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 40801438 - 40801480
Alignment:
| Q |
179 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
221 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40801438 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 40801509 - 40801551
Alignment:
| Q |
179 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
221 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40801509 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 18701771 - 18701578
Alignment:
| Q |
18 |
agcatcactgttgcaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagag |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18701771 |
agcatcacttttgcaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttacgttggagaaacaaccttaaagag |
18701672 |
T |
|
| Q |
118 |
tgaaaattggtgtcagtgtggagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaatt |
211 |
Q |
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||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
18701671 |
tgaaaattggtgtcaatgtggagtaactgccattagctaagatacacagagaggtttcctaatagttttaaatgtatgctacaagaattcaatt |
18701578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 247 - 408
Target Start/End: Complemental strand, 18701527 - 18701366
Alignment:
| Q |
247 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
18701527 |
aatctgcttattttgttctaaataatatttcagaaacacaataactcagagcgatatatagataccagagggaatattgtttcttaaggaatggcctgaa |
18701428 |
T |
|
| Q |
347 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt |
408 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18701427 |
atagagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt |
18701366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 2248833 - 2248663
Alignment:
| Q |
39 |
taactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagagtgaaaattggtgtcagtgtgg |
138 |
Q |
| |
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||||||||||||| |||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||| || | |
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| T |
2248833 |
taactttgtacatttactactttcgattttaccttacaactgttacattattttaggttggagaaacaaccttaaagtgtggaaattggagtcaatgaag |
2248734 |
T |
|
| Q |
139 |
agtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaatt |
211 |
Q |
| |
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|| | |||||||| |||||| ||||||| |||| | || ||||| |||||||| |||||||||| |||| |
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| T |
2248733 |
aggagctgccatcggccaagatagacagaga--tttcctcattgttttcaatgtatgatacaagaattgaatt |
2248663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 14138458 - 14138535
Alignment:
| Q |
26 |
tgttgcaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaa |
104 |
Q |
| |
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||||||| |||||||||||| || || |||| ||||| || |||| |||||||||||||| || ||||||||||||||| |
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| T |
14138458 |
tgttgcagcatggtaactttctaaatttactactttctatgttaccttacaactgttaca-tattttaggttggagaaa |
14138535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 214
Target Start/End: Complemental strand, 24866879 - 24866704
Alignment:
| Q |
39 |
taactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagagtgaaaattggtgtcagtgtgg |
138 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||| ||||||| |||||||||||| || | |
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| T |
24866879 |
taactttgtacatttactactttctattttaccttacaactgttacattattttaggttggagatacagcctgaaagagtagaaattggtgtcaatgcag |
24866780 |
T |
|
| Q |
139 |
agtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaattgta |
214 |
Q |
| |
|
|| ||||||||| |||| | ||| ||||||||| | || ||||| |||||| ||||||||||| ||||||| |
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|
| T |
24866779 |
agggactgccatcggccaagaaagacatagaggtttcctcattgttttcgatgtatactacaagaattgaattgta |
24866704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 24866657 - 24866526
Alignment:
| Q |
247 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
346 |
Q |
| |
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||||| |||||||| |||||| |||||||||| ||||||||||||| | |||||||| |||||| ||||||||||| |||| || ||||||||| | | |
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| T |
24866657 |
aatcttcttattttattctaactaatatttcaaaaacacaataacttatagcaatatgtagatatgagagggattatggttttttgaggaatggctggga |
24866558 |
T |
|
| Q |
347 |
acaaagtaataacaaaaatatgaagaaataca |
378 |
Q |
| |
|
||| || |||||||| |||||| |||||||| |
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|
| T |
24866557 |
acatagagataacaaatatatgatgaaataca |
24866526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 17882624 - 17882796
Alignment:
| Q |
28 |
ttgcaacatggtaactttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaacaaccttaaagagtgaaaattgg |
127 |
Q |
| |
|
||||| |||||||||| ||||||| |||| |||| ||||||| ||||||||||||||||| |||| | ||||||||||||||||||||| | ||||||| |
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|
| T |
17882624 |
ttgcagcatggtaactgtgtacatttacttctttttattttaccttacaactgttacattattttacg-tggagaaacaaccttaaagaggggaaattgg |
17882722 |
T |
|
| Q |
128 |
tgtcagtgtggagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaa |
201 |
Q |
| |
|
|| || || ||| |||| |||| |||||| ||||||||||||| | || | ||| |||||||||||||| |
|
|
| T |
17882723 |
tggcaatgcagaggggctgctatcagccaagatagacagagaggtttcctcatcgctttcaatgtatgctacaa |
17882796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 5461421 - 5461361
Alignment:
| Q |
44 |
ttgtacatctactcctttcaattttacattacaactgttacattaatttaggttggagaaa |
104 |
Q |
| |
|
|||||||| || | ||||| ||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5461421 |
ttgtacatttattactttctattttaccttacaactgttccattattttaggttggagaaa |
5461361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 408
Target Start/End: Complemental strand, 50379561 - 50379400
Alignment:
| Q |
247 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
346 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||| | ||| ||||||| |||||| | | ||||| |||| || |||| |||||||| ||||| |
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|
| T |
50379561 |
aatcttcttattttattctaactaatatttcaaaaacaaagtaattgagagcggtatataaacatgagaggtattagggtatcttgaggaatggtctgaa |
50379462 |
T |
|
| Q |
347 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt |
408 |
Q |
| |
|
||| | |||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
50379461 |
acagtgagataacaaaaataggaagaaatcgggaatatcaacggagcatcgcaacaatgttt |
50379400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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