View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13596_high_4 (Length: 304)
Name: NF13596_high_4
Description: NF13596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13596_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 30414229 - 30414492
Alignment:
| Q |
20 |
caaaactaagaaaaacccaaaatcactgtgagcagacaacggcataggctagcgacaacggagatgaactcgtatctaagatcactgtgagcagacaaca |
119 |
Q |
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| T |
30414229 |
caaaactaagaaaaacccaaaatcactgtgagcagacaacggcataagctagcgacaacggatatgaactcgtatctaagatcactgtgagcagacaaca |
30414328 |
T |
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| Q |
120 |
gaagaaaagcaagaaacaccacacactcttcctcattatcaccacaaccaaaacctcacttccatgcaaacaactccgttaacaaacgagttatccttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414329 |
gaagaaaagcaagaaacaccacacactcttcctcattatcaccacatccaaaacctcacttccatgcaaacaactccgttaacaaacgagttatccttct |
30414428 |
T |
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| Q |
220 |
agcacgcttcaaccttcttcaactacccattaattaaaatcacactttaaaccccattcttcac |
283 |
Q |
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| T |
30414429 |
agcacgcttcaaccttcttcaactacccattaattaaaatcacaccttcaaccccattcttcac |
30414492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 19134185 - 19134304
Alignment:
| Q |
138 |
ccacacactcttcctcattatcaccacaaccaaaacctcacttccatgcaaacaactccgttaacaaacgagttatccttctagcacgcttcaaccttct |
237 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||| ||||||||| | ||||||||||| | || | ||||||| |||| || || |||||| |
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| T |
19134185 |
ccacacactcctcctcatcatcaccacaaccaaaacctcaccaccatgcaaaataatccgttaacaatc-agctctccttctggcaccctccagccttct |
19134283 |
T |
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| Q |
238 |
tcaactacccattaattaaaa |
258 |
Q |
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| T |
19134284 |
tcaaccacctattaattaaaa |
19134304 |
T |
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