View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13596_low_1 (Length: 654)
Name: NF13596_low_1
Description: NF13596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13596_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 441 - 639
Target Start/End: Original strand, 2419000 - 2419198
Alignment:
| Q |
441 |
ctatactttttaaaactcgttatccaaccctgatcaaccccaccgtccactagcagaacctatttaaagccagaacaaaactttgtatatcaaaatacaa |
540 |
Q |
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| T |
2419000 |
ctatattttttaaaactcgatatccaaccctgatcaaccccaccgtccactagcaggatctatttaaagccagaacaaaactttgtatatcaaaatacaa |
2419099 |
T |
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| Q |
541 |
cttaaaacactcaataatacaacaaaaaacatattttgagattataactcacaaagattgaaactttaagcaatgaaagagttaaatcagatcaatggt |
639 |
Q |
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| T |
2419100 |
cttaaaacactcaataatacaacaaaaaacatattttgagattataactcacaaagattgaaactttaagcaatgaaagagttaaatcagatcaatggt |
2419198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 177 - 359
Target Start/End: Original strand, 2418764 - 2418946
Alignment:
| Q |
177 |
tgaatcaccagatcgaaatagaccaaaataagataataaaacagtaccatgctgaggaaatttccaccaccaccagcattaagcttatcaacctcataga |
276 |
Q |
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| T |
2418764 |
tgaatcaccagatccaaatagaccaaaataaaataataaaacagtaccatgctgaggaaatttccaccaccaccagcattaagcttatcaacctcataga |
2418863 |
T |
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| Q |
277 |
tagtagcatgaagagtaccatgaagatgaatttgtgccatttttcacctacaaatcacacaaccccatttctcatcagatcac |
359 |
Q |
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| T |
2418864 |
tagtagcatgaagagtaccatgaagatgaatttgtgccatttttcacctacaaatcacacaaccccatttttcatcagatcac |
2418946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 2418601 - 2418640
Alignment:
| Q |
11 |
cacagatcctaaaagcaagcagggtccactttgatgcatc |
50 |
Q |
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| T |
2418601 |
cacagatcctaaaagcaagcagggtccactctgatgcatc |
2418640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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