View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13596_low_2 (Length: 504)
Name: NF13596_low_2
Description: NF13596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13596_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 9870803 - 9870451
Alignment:
| Q |
1 |
ttgagttacattatactttttaatgaaaacagaaaatatttgctacaagagtgtacgtcttttaaggtgctatggataatggttgtgtgactactgtcta |
100 |
Q |
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| T |
9870803 |
ttgagttacattatactttttaatgaaaacagaaaatatttgctacaagagtgtacgtcttttaaggtgctgtggataatggttgtgtgactactgtcta |
9870704 |
T |
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| Q |
101 |
ctgaaaacaatatctaatgaaaaacattcctcttggcattgttggatctcatataaatcaactaatgccagaaaacaatgttaagagtcaggcatgattg |
200 |
Q |
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| T |
9870703 |
ctgaaaacaatatctaatgaaaaacattcctcttggcattgttggatctcatataaatcaactaatgccagaaaacaatgttaagagtcaggcataattg |
9870604 |
T |
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| Q |
201 |
gttttcatgtccctccaaaaatgatgacattcagaacatgtatctagctagacatatcctatttccttctataggaaaaaagtgcattatctattgaaaa |
300 |
Q |
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| T |
9870603 |
gttttcatgtccctccaaaaatgatgacattcagaacatgtatctagctagacatatcctatttccttctataggaaaaaagtgcattatctattgaaaa |
9870504 |
T |
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| Q |
301 |
atgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
353 |
Q |
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| T |
9870503 |
atgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
9870451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 9870387 - 9870308
Alignment:
| Q |
417 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaataaatcccttcccctctgtg |
496 |
Q |
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| T |
9870387 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaataaatcccttcccctctgtg |
9870308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 9865844 - 9865931
Alignment:
| Q |
265 |
ccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtcttgcactggaaacaaa |
353 |
Q |
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| T |
9865844 |
ccttctataggaaaaa-gtgtattatttattgaaaaatgtaaagtgtgtttttcatgtagtagtctattagtcatgcaccggaaacaaa |
9865931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 9865928 - 9866006
Alignment:
| Q |
417 |
caaataatttgtatattatgaatgtttattaattgatatagatactgctcttggatgaaataaatcccttcccctctgt |
495 |
Q |
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| T |
9865928 |
caaataatttgtatattatgaatgtttattaattgatataaatacccctcttggataaaataaatcctttcccgtctgt |
9866006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 9896002 - 9895933
Alignment:
| Q |
25 |
gaaaacagaaaatatttgctacaagagtgtacgtct-tttaaggtgctatggataatggttgtgtgacta |
93 |
Q |
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| T |
9896002 |
gaaaacagaaaatatttgccacaagagcttaagtctctttaaggttctgtggataatggctgtgtgacta |
9895933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 9865750 - 9865804
Alignment:
| Q |
164 |
aatgccagaaaacaatgttaagagtcaggcatgattggttttcatgtccctccaaa |
219 |
Q |
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| T |
9865750 |
aatgccagaaaacaaaattaagagtctgaca-gattggttttcatgtccctccaaa |
9865804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 9906562 - 9906505
Alignment:
| Q |
163 |
taatgccagaaaacaatgttaagagtcaggcatgattggttttcatgtccctccaaaa |
220 |
Q |
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| T |
9906562 |
taatgccgtaaaacaaaattaagagtctgacatgattagttttcatgtccctccaaaa |
9906505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 9906466 - 9906395
Alignment:
| Q |
265 |
ccttctataggaaaaaagtgcattatctattgaaaaatgtaaagtgtgtttttcatgtagtagtccattagtc |
337 |
Q |
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| T |
9906466 |
ccttctataggaaaaaa-tatactatttattgaaaaatgtaaagtgtattttttatgtaattgtccactagtc |
9906395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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