View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13597_high_5 (Length: 392)
Name: NF13597_high_5
Description: NF13597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13597_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 49165947 - 49166322
Alignment:
| Q |
1 |
atgttacagtttgaggaaaaattgtggcctgtacaattgatgtattatcaatccgaaccagaaacaaagttgggtgaaggatggagtctgtttgtagaag |
100 |
Q |
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| T |
49165947 |
atgttacagtttgaggaaaaattgtggcctgtacaattgatgtattatccatccgaaccagcaacaaagttgggtgaaggttggagtctgtttgtagaag |
49166046 |
T |
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| Q |
101 |
aaaataaattgaaggctggagatgtatgtgtttttgtgcttgccaacaaggaagatgttgtgcttgatgttcatatttttagaggacgcagttaggcaac |
200 |
Q |
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| T |
49166047 |
aaaataaattgcaggctggagatgtatgtgtttttgtgcttgccaacaaggaagatgttgtgcttgatgttcatatttttagaggacgcagttaggcaac |
49166146 |
T |
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| Q |
201 |
caattgggagatgttattaccgcaattatgcaaagatttattacttacataccaatgcaacagataaaattgaccttttatggtatttattagtcccaaa |
300 |
Q |
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| T |
49166147 |
caattgggagatgttattaccgcaattatgcaaagatttattacttacataccaatgcaacagataaaattgaccttttatggtatttattagtcccaaa |
49166246 |
T |
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| Q |
301 |
tctagaagatagttcataggtttgaatacttttggctacaggttcacaatacctacattttccaaatactagtatg |
376 |
Q |
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| T |
49166247 |
tctagaagatagttcataggtttgaatacttttggctacaggttcacaatacctacattttccaaatactagtatg |
49166322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 12875657 - 12875745
Alignment:
| Q |
97 |
gaagaaaataaattgaaggctggagatgtatgtgtttttgtgcttgccaacaaggaagatgttgtgcttgatgttcatatttttagagg |
185 |
Q |
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| T |
12875657 |
gaagaaaataaattgaaaggtggagatgcatgtgtctttgagctcatcaagagggaagatgttgtgcttaatgttcatattttcagagg |
12875745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 43752464 - 43752617
Alignment:
| Q |
90 |
gtttgtagaagaaaataaattgaaggctggagatgtatgtgtttttgtgcttgccaacaaggaagatgttgtgcttgatgttcatatttttagaggacgc |
189 |
Q |
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| T |
43752464 |
gtttgtagaggaaaataaattggaggctggagatgtatgtgtttttgagctcgtcaataaggaagatcttgtgtttgatgctcatattttcagaggctgc |
43752563 |
T |
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| Q |
190 |
agttaggcaaccaatt--gggagatgttattaccgcaattatgcaaagatttat |
241 |
Q |
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| T |
43752564 |
aattagactatcgatttgggaagatgttattgccgcaattatgcaaagatttat |
43752617 |
T |
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