View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13597_high_8 (Length: 232)
Name: NF13597_high_8
Description: NF13597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13597_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 29303225 - 29303426
Alignment:
| Q |
18 |
caaagggaagaaagaatcatatataaattaaattgtaagcatcacgaataacaggatatgaatgaaatcagcaaaaataataataattttctagcattgt |
117 |
Q |
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| T |
29303225 |
caaaaggaagaaagaatcatatataaattaaattgtaagcatcacgaataacaggatatgaatgaaatcagcaaaaataataataattttctagcattgt |
29303324 |
T |
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| Q |
118 |
gtgtactcagaagaaacttaattgcataatggtcaagattgnnnnnnnatggttcaagcgtccattat-----aagtatccgttaataaataccgttctg |
212 |
Q |
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| T |
29303325 |
gtgtactcagaagaaacttagttgcgtaatggtcaagattgtttttttatggttcaagcgtccattatggttcaagtatccgttaataaataccgttctg |
29303424 |
T |
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| Q |
213 |
at |
214 |
Q |
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|| |
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| T |
29303425 |
at |
29303426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 29320616 - 29320689
Alignment:
| Q |
19 |
aaagggaagaaagaatcatatataaattaaattgtaagcatcacgaataacaggatatgaatgaaatcagcaaa |
92 |
Q |
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|||||||||| |||||| ||||| ||| | ||||| ||||| || ||||||| |||||| |||||||||||||| |
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| T |
29320616 |
aaagggaagagagaatcgtatatgaatgagattgttagcattacaaataacatgatatgtatgaaatcagcaaa |
29320689 |
T |
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