View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13597_low_14 (Length: 208)

Name: NF13597_low_14
Description: NF13597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13597_low_14
NF13597_low_14
[»] chr1 (14 HSPs)
chr1 (11-204)||(28674764-28674956)
chr1 (52-114)||(2784561-2784623)
chr1 (73-143)||(5898229-5898299)
chr1 (55-143)||(18190071-18190159)
chr1 (59-115)||(23636040-23636096)
chr1 (55-102)||(609462-609509)
chr1 (39-105)||(6427342-6427408)
chr1 (22-111)||(2896116-2896205)
chr1 (55-104)||(12993202-12993251)
chr1 (59-116)||(29163371-29163428)
chr1 (54-143)||(40258896-40258985)
chr1 (86-143)||(43492457-43492514)
chr1 (55-111)||(19637776-19637832)
chr1 (55-143)||(38078624-38078712)
[»] chr6 (13 HSPs)
chr6 (75-150)||(26314590-26314665)
chr6 (55-142)||(9658887-9658974)
chr6 (54-105)||(14721248-14721299)
chr6 (58-143)||(13360336-13360420)
chr6 (55-104)||(15443703-15443752)
chr6 (55-146)||(7977790-7977881)
chr6 (55-105)||(9617442-9617492)
chr6 (55-105)||(24115848-24115898)
chr6 (73-143)||(28152124-28152194)
chr6 (56-105)||(9629392-9629441)
chr6 (75-143)||(33419201-33419270)
chr6 (59-111)||(7377991-7378043)
chr6 (37-101)||(30866149-30866213)
[»] scaffold0022 (1 HSPs)
scaffold0022 (54-143)||(90850-90939)
[»] chr3 (8 HSPs)
chr3 (53-105)||(7614416-7614468)
chr3 (55-134)||(45451561-45451640)
chr3 (52-142)||(21419420-21419509)
chr3 (37-105)||(47362552-47362620)
chr3 (58-100)||(27097065-27097107)
chr3 (55-112)||(20691327-20691384)
chr3 (55-122)||(11251986-11252051)
chr3 (55-143)||(55401083-55401171)
[»] chr7 (11 HSPs)
chr7 (55-134)||(22484033-22484112)
chr7 (57-134)||(3554478-3554555)
chr7 (55-143)||(598216-598304)
chr7 (48-143)||(21880153-21880248)
chr7 (55-110)||(24146824-24146879)
chr7 (96-143)||(33994261-33994308)
chr7 (52-102)||(27732243-27732293)
chr7 (55-104)||(23849460-23849509)
chr7 (55-105)||(19206058-19206108)
chr7 (55-111)||(3721101-3721157)
chr7 (55-127)||(4909159-4909231)
[»] chr5 (5 HSPs)
chr5 (55-105)||(22423813-22423863)
chr5 (55-107)||(23287348-23287400)
chr5 (55-105)||(17925173-17925223)
chr5 (55-105)||(18592081-18592131)
chr5 (52-102)||(30098331-30098381)
[»] chr4 (6 HSPs)
chr4 (55-143)||(8423681-8423769)
chr4 (56-127)||(9996849-9996920)
chr4 (48-112)||(11135288-11135352)
chr4 (55-143)||(21345496-21345584)
chr4 (55-111)||(33950144-33950200)
chr4 (96-144)||(34306766-34306814)
[»] chr8 (14 HSPs)
chr8 (55-122)||(14134707-14134774)
chr8 (55-112)||(12985400-12985457)
chr8 (55-139)||(20679362-20679446)
chr8 (54-105)||(4786339-4786390)
chr8 (55-110)||(12606825-12606880)
chr8 (53-99)||(8798838-8798884)
chr8 (55-104)||(7658471-7658520)
chr8 (55-128)||(26434188-26434261)
chr8 (48-93)||(38278188-38278233)
chr8 (56-92)||(9382981-9383017)
chr8 (16-104)||(12570736-12570824)
chr8 (55-103)||(31236580-31236628)
chr8 (53-121)||(33405369-33405437)
chr8 (54-102)||(37380949-37380997)
[»] chr2 (9 HSPs)
chr2 (55-105)||(31026703-31026753)
chr2 (95-143)||(27084317-27084365)
chr2 (55-106)||(34331395-34331446)
chr2 (61-100)||(35973949-35973988)
chr2 (52-105)||(17077013-17077065)
chr2 (40-93)||(35447900-35447953)
chr2 (52-97)||(41942110-41942155)
chr2 (55-143)||(18840976-18841064)
chr2 (39-87)||(19959807-19959855)
[»] scaffold0110 (1 HSPs)
scaffold0110 (52-104)||(28855-28907)
[»] scaffold0050 (1 HSPs)
scaffold0050 (53-143)||(70284-70374)
[»] scaffold0053 (1 HSPs)
scaffold0053 (96-144)||(8847-8895)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 28674764 - 28674956
Alignment:
Q  11 cacagacattagacacaacatagacgccgacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagaca 110  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||    
T  28674764 cacagacactagacacaacatagacgccgacacgctaacaccgttaataatttgagaaaattacataattcagtataattatatatgttggtgtcagaca 28674863  T
Q  111 caacacttgtccaacaccgagacaggcctaatctaaaaagcgtatgtgccctatattcaactcattataagtagttcataactataattataat 204  Q
    | ||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28674864 cgacacttgtccaacactgagacacgcctaatct-aaaagtgtatgtgccctatattcaactcattataagtagttcataactataattataat 28674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 2784561 - 2784623
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaac 114  Q
    |||||| ||||||||||||  |||||||| | ||||||||||| |||||||||||||||||||    
T  2784561 cgttaaaaatttaagaaaatcacataattgagtataattatatgtgtcggtgtcagacacaac 2784623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 5898299 - 5898229
Alignment:
Q  73 acataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||| | |||||||||  ||||||||||||||| |||| |||||||||||| |||| | ||||||    
T  5898299 acataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatc 5898229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 18190159 - 18190071
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| | |||| ||||||||||| | |||||| |  ||||| ||||||||||||||| ||||| |||||| ||||  |||||||    
T  18190159 taataatttgaaaaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatc 18190071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 23636096 - 23636040
Alignment:
Q  59 aatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaaca 115  Q
    ||||| |||||| ||||||||||| | ||||| ||| ||||||||||||||||||||    
T  23636096 aatttgagaaaattacataattcagtgtaattgtatgtgtcggtgtcagacacaaca 23636040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 609509 - 609462
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggt 102  Q
    ||||||||| |||||| |||||||||||| ||||| ||||||||||||    
T  609509 taataatttgagaaaattacataattcaacataatcatatatgtcggt 609462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 6427342 - 6427408
Alignment:
Q  39 gacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||| |||| || ||||||||| ||||||  |||||||||||| ||||||||| ||| ||||||    
T  6427342 gacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtc 6427408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 2896205 - 2896116
Alignment:
Q  22 gacacaacatagacgccgacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacac 111  Q
    |||||||||  ||| | |||||||  ||| || ||||||||| ||||||  |||||||||| | ||  ||||||||||||||||||||||    
T  2896205 gacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagacac 2896116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 12993202 - 12993251
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    |||||||||| | ||| ||| ||||||||| |||||||||||||||||||    
T  12993202 taataatttacgtaaattacgtaattcaatgtaattatatatgtcggtgt 12993251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 29163428 - 29163371
Alignment:
Q  59 aatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacac 116  Q
    |||||| |||||  |||||||||||| ||||||||| |||||||||| ||||| ||||    
T  29163428 aatttaggaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacac 29163371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 40258985 - 40258896
Alignment:
Q  54 ttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||| | ||||  |||||||||| | |||||| |  |||||||||||||||| |||| ||||| |||||  |||| ||||||||    
T  40258985 ttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatc 40258896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 43492514 - 43492457
Alignment:
Q  86 taattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||| | ||||||||||||||||||||| ||||| ||||||  ||| ||||||||    
T  43492514 taattatgtgtgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 19637776 - 19637832
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacac 111  Q
    ||||||||||||||||  |||| ||||||| |||| |||| |||||||||| |||||    
T  19637776 taataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 38078712 - 38078624
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| | ||||  |||||||||||| |||||| |  |||||||||| ||||| |||| ||| |||||||  |||| ||||||||    
T  38078712 taataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatc 38078624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 26314665 - 26314590
Alignment:
Q  75 ataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatctaaaaag 150  Q
    |||||||||| |||||||||||||||| |||||| || |||||||||||||||||| ||| || ||||| ||||||    
T  26314665 ataattcaatgtaattatatatgtcggggtcagatacgacacttgtccaacaccgaaacaagcttaatcgaaaaag 26314590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 9658887 - 9658974
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaat 142  Q
    ||||||||||||||||  |||||||||| | ||||||||| ||||||||| |||||| |||| ||||  ||||||  ||| |||||||    
T  9658887 taataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaat 9658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 14721248 - 14721299
Alignment:
Q  54 ttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||    
T  14721248 ttaataatttaagaaaattacataattcactataattatatgtgttggtgtc 14721299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 13360420 - 13360336
Alignment:
Q  58 taatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||| ||||||  |||||||||| | ||||||||| | ||||||||||||||||||  ||||| |||| |||||| ||||||||    
T  13360420 taatttgagaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatc 13360336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 15443703 - 15443752
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    ||||||||| ||||||  |||||||||||||||||||||||||| |||||    
T  15443703 taataatttgagaaaataacataattcaatataattatatatgttggtgt 15443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 7977881 - 7977790
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatctaa 146  Q
    ||||||||| | |||| ||||||||||| | |||||| |  |||||||||| |||||||||  ||||| ||| ||| ||| |||||||||||    
T  7977881 taataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaa 7977790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 9617442 - 9617492
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||| ||||||  |||||||||||| ||||||||| ||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 24115898 - 24115848
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||| | ||||  |||||||||||||||||||||||||| ||||||    
T  24115898 taataatttcaaaaaatcacataattcaatataattatatatgttggtgtc 24115848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 28152124 - 28152194
Alignment:
Q  73 acataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||| | |||||| |  |||||||||| ||||| |||| ||||| |||||| |||||||||||||    
T  28152124 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatc 28152194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 9629392 - 9629441
Alignment:
Q  56 aataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    |||||||| ||||||  |||||||||||| ||||||||| ||||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 33419201 - 33419270
Alignment:
Q  75 ataattcaatataattatatatgtcggtgtcagaca-caacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||| ||||||||| ||| ||||||||||| |||| | |||||||||||  |||| ||||||||    
T  33419201 ataattcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatc 33419270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7377991 - 7378043
Alignment:
Q  59 aatttaagaaaactacataattcaatataattatatatgtcggtgtcagacac 111  Q
    ||||| ||||||  |||||||||||| ||||||||| |||||||||| |||||    
T  7377991 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacac 7378043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 30866213 - 30866149
Alignment:
Q  37 ccgacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcgg 101  Q
    ||||||| | |||| || ||||||||| ||||||  |||||||||||| ||||||||| ||||||    
T  30866213 ccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 90850 - 90939
Alignment:
Q  54 ttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||| ||||||  | |||||||| | ||||||||||||||| ||||||||||||||| ||||| ||||| | ||| ||||||||    
T  90850 ttaataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatc 90939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 7614468 - 7614416
Alignment:
Q  53 gttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  7614468 gttaataatttaagaaaatcacataattcagtataattatatatgtcggtgtc 7614416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 45451561 - 45451640
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagaca 134  Q
    ||||||||| ||||||  ||||| |||| |||||| |||| |||||||||| ||||| |||| ||||| |||||||||||    
T  45451561 taataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacaccgagaca 45451640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 21419509 - 21419420
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaat 142  Q
    |||||||||||||||||||  | |||||||||| ||||||||||||| ||||||  |||| | || ||||| ||||||| ||| |||||||    
T  21419509 cgttaataatttaagaaaataatataattcaatgtaattatatatgttggtgtcgaacaccatacatgtcc-acaccgaaacacgcctaat 21419420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 47362552 - 47362620
Alignment:
Q  37 ccgacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||  ||||||  |||||||||||||||| ||||||||| ||| |||||||| ||||| |||||    
T  47362552 ccgacacgtcaacatcagtaataatttaagaaaattacataattgaatgtaattatacatgtcagtgtc 47362620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 27097107 - 27097065
Alignment:
Q  58 taatttaagaaaactacataattcaatataattatatatgtcg 100  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  27097107 taatttgagaaaattacataattcaatttaattatatatgtcg 27097065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 20691327 - 20691384
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacaca 112  Q
    ||||||||| ||||||  |||||||||| | |||| |||| |||||||||||||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacaca 20691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 11251986 - 11252051
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtcc 122  Q
    ||||||||| ||||||  |||||||||| | ||||||| |  |||||||||||||||||||| |||||    
T  11251986 taataatttgagaaaatcacataattcagtgtaattatgt--gtcggtgtcagacacaacacgtgtcc 11252051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 55401083 - 55401171
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| | ||||  |||||||| | | |||||| |  |||||||||| ||||| |||| ||||| ||||||||||| ||||||||    
T  55401083 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatc 55401171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 22484033 - 22484112
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagaca 134  Q
    ||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||  |||| ||||| ||| |||||||    
T  22484033 taataattttagaaaattgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgagaca 22484112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 3554555 - 3554478
Alignment:
Q  57 ataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagaca 134  Q
    |||||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| |||| | || ||||| ||||||    
T  3554555 ataatttaagaaaattacataatttaatgtaattatagatgtcggtgtcggacacgacacatatctaacactgagaca 3554478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 598216 - 598304
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||||||||||  || ||||| ||| ||||| ||  |||||||||||||||| |||| ||||| |||||| |||| ||||||||    
T  598216 taataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatc 598304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 21880153 - 21880248
Alignment:
Q  48 acatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||| ||||||||| |||||| ||||||||||| | |||||| |  |||||||||| ||||| |||| ||||| |||||  |||| ||||||||    
T  21880153 acatcgctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatc 21880248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 24146824 - 24146879
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagaca 110  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||||||||| ||||    
T  24146824 taataattttagaaaatcacataattcaatataattatatgtgtcggtgtctgaca 24146879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 33994261 - 33994308
Alignment:
Q  96 tgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  33994261 tgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatc 33994308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 27732293 - 27732243
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggt 102  Q
    ||||||||||||||||||| ||||||||||| | ||||||||| |||||||    
T  27732293 cgttaataatttaagaaaattacataattcagtgtaattatatgtgtcggt 27732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 23849509 - 23849460
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    ||||||||||||||||  |||||||||| ||||||||||| |||||||||    
T  23849509 taataatttaagaaaaacacataattcagtataattatatgtgtcggtgt 23849460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 19206058 - 19206108
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||| ||||||  |||||||||| ||||||||||| ||||||||||    
T  19206058 taataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 3721101 - 3721157
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacac 111  Q
    ||||||||| ||||||  |||||||| | ||||||||||| |||||||||| |||||    
T  3721101 taataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcggacac 3721157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 4909159 - 4909231
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacac 127  Q
    ||||||||| |||||| ||||||||||| | |||| |||| |||| ||||| ||||||| || | ||||||||    
T  4909159 taataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcggacacaatacatatccaacac 4909231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 22423863 - 22423813
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgtc 22423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 23287400 - 23287348
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcag 107  Q
    |||||||||| |||||  |||||||||||||||||||||| |||| |||||||    
T  23287400 taataatttaggaaaatgacataattcaatataattatatgtgtcagtgtcag 23287348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 17925223 - 17925173
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||||||||||  |||||||||||| |||| |||| ||||||||||    
T  17925223 taataatttaagaaaatcacataattcaatgtaataatatgtgtcggtgtc 17925173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 18592081 - 18592131
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||| |||||||||| ||||||||||||| ||||||||| || |||||||    
T  18592081 taatattttaagaaaattacataattcaatgtaattatatgtgccggtgtc 18592131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 30098331 - 30098381
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggt 102  Q
    |||||||||||| ||||||  |||||||||||| |||||||| ||||||||    
T  30098331 cgttaataatttgagaaaatcacataattcaatgtaattatagatgtcggt 30098381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 8423769 - 8423681
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| ||||||  |||||||||| | |||||||| ||||||||||| ||||| |||  ||||| |||||| |||| ||||||||    
T  8423769 taataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatc 8423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 9996849 - 9996920
Alignment:
Q  56 aataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacac 127  Q
    |||||||| ||||||  |||||||||| ||||||||||| | ||||||||||||| ||||| ||||| ||||    
T  9996849 aataatttgagaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacac 9996920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 11135352 - 11135288
Alignment:
Q  48 acatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacaca 112  Q
    |||||| ||||| ||| |||||| |||||||||||||||||||| || ||||  |||||||||||    
T  11135352 acatcgctaatagtttgagaaaattacataattcaatataattacatgtgtcactgtcagacaca 11135288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 21345584 - 21345496
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| | ||||  |||||| ||||| |||| || |||||||||||||||||| | || | ||||||||||  ||| ||||||||    
T  21345584 taataatttgaaaaaataacataactcaatgtaatcatttatgtcggtgtcagacacgatacatatccaacaccggtacatgcctaatc 21345496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 33950144 - 33950200
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacac 111  Q
    ||||||||| ||||||  |||||||| ||| |||| |||| ||||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  96 tgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatct 144  Q
    |||||||||| ||||| |||| ||||| ||||||||||| |||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 14134707 - 14134774
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtcc 122  Q
    ||||||||| ||||||  |||||||||| | ||||||||||||||||||||| |||| |||| |||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtcc 14134774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 12985400 - 12985457
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacaca 112  Q
    ||||||||| ||||||  |||||||||||| |||| ||||||||||||||| ||||||    
T  12985400 taataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacaca 12985457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 20679446 - 20679362
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcct 139  Q
    ||||||||| ||||||  ||||| |||| | ||||||||  |||||||||||||| |||||| ||||| |||||| |||| ||||    
T  20679446 taataatttgagaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgcct 20679362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 4786390 - 4786339
Alignment:
Q  54 ttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    |||||||||||||||||  |||||||||| | ||||||||| ||||||||||    
T  4786390 ttaataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtc 4786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 12606880 - 12606825
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagaca 110  Q
    ||||||||| ||||||  | |||||||||| ||||||||| |||||||||||||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 8798884 - 8798838
Alignment:
Q  53 gttaataatttaagaaaactacataattcaatataattatatatgtc 99  Q
    ||||||||||| ||||||  |||||||||||||||||||||| ||||    
T  8798884 gttaataatttgagaaaataacataattcaatataattatatgtgtc 8798838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 7658471 - 7658520
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    ||||||||| |||||| ||||||||||| | ||||||||| |||||||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattatatttgtcggtgt 7658520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 26434188 - 26434261
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacacc 128  Q
    ||||| ||| ||||||  ||||||||||||||||||| |  |||||||||  ||||||| || |||||||||||    
T  26434188 taatagtttgagaaaatcacataattcaatataattaaaagtgtcggtgttggacacaatacgtgtccaacacc 26434261  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 38278233 - 38278188
Alignment:
Q  48 acatcgttaataatttaagaaaactacataattcaatataattata 93  Q
    |||||| ||||||||||||||||  |||||||| ||||||||||||    
T  38278233 acatcgctaataatttaagaaaatcacataatttaatataattata 38278188  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 9382981 - 9383017
Alignment:
Q  56 aataatttaagaaaactacataattcaatataattat 92  Q
    |||||||| |||||||||||||||||||| |||||||    
T  9382981 aataatttgagaaaactacataattcaatgtaattat 9383017  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 12570824 - 12570736
Alignment:
Q  16 acattagacacaacatagacgccgacacgctaacatcgttaataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    ||||| ||||| | |||||| |||||||| | ||| || ||||||||||||||||   ||||||| | | ||||||||||||| |||||    
T  12570824 acattggacacgatatagacaccgacacgttgacaccgctaataatttaagaaaaacgcataattaagtgtaattatatatgttggtgt 12570736  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtg 103  Q
    ||||||||| ||||||  |||||||||||| ||||||||| ||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 33405437 - 33405369
Alignment:
Q  53 gttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtc 121  Q
    ||||||||||| ||||||  |||||||| | | ||||||||| |||||||||| ||||| |||| ||||    
T  33405437 gttaataatttgagaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtc 33405369  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 37380949 - 37380997
Alignment:
Q  54 ttaataatttaagaaaactacataattcaatataattatatatgtcggt 102  Q
    |||||||||||| | ||  |||||||||||||||||||||| |||||||    
T  37380949 ttaataatttaacataatcacataattcaatataattatatttgtcggt 37380997  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 31026703 - 31026753
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    ||||||||||||||||  |||||||||||| |||| |||||||||||||||    
T  31026703 taataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtc 31026753  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 27084317 - 27084365
Alignment:
Q  95 atgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||    
T  27084317 atgtcggtgtcggacacgacacgtgtccaacaccgagacacgcctaatc 27084365  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 34331395 - 34331446
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtca 106  Q
    |||||||||||||||| || |||||| ||||||||||||||| ||| |||||    
T  34331395 taataatttaagaaaattatataattaaatataattatatatttcgatgtca 34331446  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 35973988 - 35973949
Alignment:
Q  61 tttaagaaaactacataattcaatataattatatatgtcg 100  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  35973988 tttaagaaaataacataattcaatataattatatatgtcg 35973949  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 17077065 - 17077013
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggtgtc 105  Q
    |||||||||||||| |||| || ||||||| |||||||||||||||| ||||||    
T  17077065 cgttaataatttaa-aaaattatataattcgatataattatatatgttggtgtc 17077013  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 35447953 - 35447900
Alignment:
Q  40 acacgctaacatcgttaataatttaagaaaactacataattcaatataattata 93  Q
    ||||||| |||||| |||||||| ||||||| ||||||||||| ||||| ||||    
T  35447953 acacgctgacatcgctaataattaaagaaaattacataattcagtataactata 35447900  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 41942110 - 41942155
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatg 97  Q
    |||||| ||||| |||||| ||||||||||| ||||||||||||||    
T  41942110 cgttaaaaatttgagaaaattacataattcagtataattatatatg 41942155  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 18841064 - 18840976
Alignment:
Q  55 taataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||| | |||| ||||||||| | | |||||| |  |||||||||||||||| |||| ||||| |||||| ||||  |||||||    
T  18841064 taataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatc 18840976  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 19959807 - 19959855
Alignment:
Q  39 gacacgctaacatcgttaataatttaagaaaactacataattcaatata 87  Q
    |||||||| |||||||||||||||| | ||||  |||||||||||||||    
T  19959807 gacacgctgacatcgttaataatttgacaaaatcacataattcaatata 19959855  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 28855 - 28907
Alignment:
Q  52 cgttaataatttaagaaaactacataattcaatataattatatatgtcggtgt 104  Q
    |||||||||||||||||||   ||||||||||| ||||||||| |||||||||    
T  28855 cgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgt 28907  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 70284 - 70374
Alignment:
Q  53 gttaataatttaagaaaactacataattcaatataattatatatgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatc 143  Q
    ||||||||||| | ||||  |||||||||| | ||||||||  |||||||||| ||||| |||| ||||| |||||  |||| ||||||||    
T  70284 gttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatc 70374  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  96 tgtcggtgtcagacacaacacttgtccaacaccgagacaggcctaatct 144  Q
    |||||||||| ||||| |||| ||||| ||||||||||| |||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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