View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13597_low_6 (Length: 401)
Name: NF13597_low_6
Description: NF13597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13597_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 32704864 - 32705239
Alignment:
| Q |
10 |
catcatccccttcttcagaaccatctttgccgtcaacaacacatcctgcgacattgtttcaatagttgttacttaaacagtagtacatttactttccttt |
109 |
Q |
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|||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
32704864 |
catcatacacttcttcagaaccatctttgccgtaaacaacacatcctgcgaaattgtttcaatagttgttacttaaacagtattaaatttactttccttt |
32704963 |
T |
|
| Q |
110 |
tcttaaggggaaggaattaaaagagtaacaagggttgagaactgagattacttactcacctttttcagatgatgaaacgaaatccacctcgcaattagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32704964 |
tcttaaggggaaggaattaaaagagtaacaagggttgagaactgagattacttactcacctttttcagatgatgaaacaaaatccacctcgcaattagtt |
32705063 |
T |
|
| Q |
210 |
attatttgactaccattactctgaagctcttctttaacctgatttttataacaacaaatagttaatgtggaatgtttggtttattgcttaagctgcaaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32705064 |
attatttgactaccattactctgaagctcttctttaacctgatttttataacaacaaatagttaatgtggaatgtttggtttattgcttaagctgcaaga |
32705163 |
T |
|
| Q |
310 |
tatatggtaaaatttaagtgacactgaaaaccactccctaagtgatctaggacccatgaaacactaccacacacat |
385 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32705164 |
tatatggtaaagtttaagtgacactgaaaaccactccctaagtgatctaggacccatgaaacactaccacacacat |
32705239 |
T |
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