View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13597_low_8 (Length: 385)
Name: NF13597_low_8
Description: NF13597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13597_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 99 - 383
Target Start/End: Complemental strand, 15261359 - 15261075
Alignment:
| Q |
99 |
gataaattgtgtctttaaatttagtgactaatttaattttttggtttctaannnnnnnncgttatttcaaatctttggtagtgtatatataattctcaga |
198 |
Q |
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| T |
15261359 |
gataaattgtgtctttaaatttagtgactaatttaattttttggtttctaattttttt-cgttatttcaaatctttggtagtgtatatataattctcaga |
15261261 |
T |
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| Q |
199 |
ctccttatctcattaaa-taacaatacaaataaataaaaatgatgatcattgattcatttgggagatccaagagnnnnnnnngagctggcaatgggattg |
297 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
15261260 |
ctccttatctcattaaaataacaatacaaataaataaaaatgatgatcattgattcatttgggagatccaagagagaaaaaagagctagcaatgggattg |
15261161 |
T |
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| Q |
298 |
aagaaagtatggaagttgacaaaaacaatgaataaatatgcatatataactaattttcaaagattcagttaccactggaatttcat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15261160 |
aagaaagtatggaagttgacaaaaacaatgaataaatatgcatatataactaattttcaaagattcagttacaactggaatttcat |
15261075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 34899975 - 34899866
Alignment:
| Q |
4 |
atctcaacttgaaagttgaagataacaaaatttacataaatgaataaaaacacatatctatttagtacttctatcgatatttgatgtaaacaaaagataa |
103 |
Q |
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|||||||||||||||||||| || |||| ||||| || ||| ||| |||||||| ||| |||||| ||||| ||| |||||||||| |||||||| ||| |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
104 |
attgtgtctt |
113 |
Q |
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| T |
34899875 |
attgtgtctt |
34899866 |
T |
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