View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13598_high_1 (Length: 1286)
Name: NF13598_high_1
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 59 - 561
Target Start/End: Complemental strand, 7279113 - 7278608
Alignment:
| Q |
59 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
158 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
7279113 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7279014 |
T |
|
| Q |
159 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7279013 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7278914 |
T |
|
| Q |
259 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278913 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
7278814 |
T |
|
| Q |
359 |
tgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttg |
458 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7278813 |
tgaagctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttg |
7278714 |
T |
|
| Q |
459 |
atgaatgaggatggtagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaag |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7278713 |
atgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaag |
7278614 |
T |
|
| Q |
556 |
ctttat |
561 |
Q |
| |
|
|||||| |
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|
| T |
7278613 |
ctttat |
7278608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 59 - 561
Target Start/End: Original strand, 7374726 - 7375231
Alignment:
| Q |
59 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttc |
158 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
7374726 |
agaaactgtgaagatgatgaaaaaggagcaaaaagagaggataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtattt |
7374825 |
T |
|
| Q |
159 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7374826 |
cattgttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagagg |
7374925 |
T |
|
| Q |
259 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374926 |
aagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaat |
7375025 |
T |
|
| Q |
359 |
tgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttg |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7375026 |
tgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttg |
7375125 |
T |
|
| Q |
459 |
atgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaag |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7375126 |
atgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaag |
7375225 |
T |
|
| Q |
556 |
ctttat |
561 |
Q |
| |
|
|||||| |
|
|
| T |
7375226 |
ctttat |
7375231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 620 - 1263
Target Start/End: Original strand, 7375290 - 7375939
Alignment:
| Q |
620 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7375290 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7375389 |
T |
|
| Q |
720 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
798 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7375390 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7375489 |
T |
|
| Q |
799 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7375490 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7375589 |
T |
|
| Q |
899 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
998 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7375590 |
tcttacacaaagagtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7375689 |
T |
|
| Q |
999 |
aatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtgatcaatgtaacta |
1095 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375690 |
aatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatcaatgtaacta |
7375789 |
T |
|
| Q |
1096 |
acttcaatgaaagtggcttccaaactctcttgacaagtgatggatcataaaattcagccaacagcaaagtaactgttgaggttttcaattattcaaatat |
1195 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
7375790 |
acttcaaagaaagtggcttccaaattctcttgacaagtgatggatcataaaattcagccaacagcaaagtaacag------------------caaatat |
7375871 |
T |
|
| Q |
1196 |
agtgctacagattacaacttcatattaaaaattacgtctcatttttgtgtattcagcttgataatatc |
1263 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375872 |
agtgctacagattacaacttcatattaaaaactacgtctcatttttgtgtattcagcttgataatatc |
7375939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 620 - 1114
Target Start/End: Complemental strand, 7278549 - 7278029
Alignment:
| Q |
620 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7278549 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7278450 |
T |
|
| Q |
720 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
798 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7278449 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7278350 |
T |
|
| Q |
799 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7278349 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7278250 |
T |
|
| Q |
899 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
998 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7278249 |
tcttacacaaagagtggagcagcttgagagagcatttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7278150 |
T |
|
| Q |
999 |
aatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtg--atcaatgtaac |
1093 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7278149 |
aatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatatcagtgtaac |
7278050 |
T |
|
| Q |
1094 |
taacttcaatgaaagtggctt |
1114 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7278049 |
taacttcaatgaaagtggctt |
7278029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
396 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
446 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
396 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
446 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 5848125 - 5848215
Alignment:
| Q |
59 |
agaacctgtgaagatgatgaaaaatgagcaaaaagagaggataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
150 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5848125 |
agaaactgtgaagatgatgaaaag-gagcaaaaagagaggataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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