View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13598_high_4 (Length: 440)

Name: NF13598_high_4
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13598_high_4
NF13598_high_4
[»] chr8 (3 HSPs)
chr8 (289-381)||(13659621-13659713)
chr8 (289-381)||(13718263-13718355)
chr8 (290-371)||(28811057-28811138)
[»] chr4 (9 HSPs)
chr4 (286-373)||(51928846-51928933)
chr4 (286-371)||(20485680-20485765)
chr4 (290-371)||(27487869-27487950)
chr4 (290-371)||(47042612-47042693)
chr4 (290-371)||(27461056-27461137)
chr4 (293-369)||(24354854-24354930)
chr4 (290-367)||(27505196-27505273)
chr4 (294-368)||(27480406-27480480)
chr4 (290-371)||(27477320-27477401)
[»] chr5 (1 HSPs)
chr5 (286-371)||(13912386-13912471)
[»] chr2 (3 HSPs)
chr2 (286-371)||(26204040-26204125)
chr2 (290-379)||(35808794-35808883)
chr2 (293-369)||(42348134-42348210)
[»] chr1 (1 HSPs)
chr1 (289-372)||(42396947-42397030)
[»] chr7 (1 HSPs)
chr7 (290-371)||(37175753-37175834)
[»] chr6 (3 HSPs)
chr6 (290-372)||(22685790-22685872)
chr6 (290-372)||(22753196-22753278)
chr6 (74-173)||(4819564-4819664)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 13659621 - 13659713
Alignment:
Q  289 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 381  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13659621 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13659713  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 13718263 - 13718355
Alignment:
Q  289 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgttt 381  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13718263 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgttt 13718355  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 28811057 - 28811138
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28811057 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 28811138  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 51928933 - 51928846
Alignment:
Q  286 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaa 373  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51928933 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgacaa 51928846  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 286 - 371
Target Start/End: Original strand, 20485680 - 20485765
Alignment:
Q  286 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20485680 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 20485765  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 27487950 - 27487869
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27487950 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27487869  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 47042693 - 47042612
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47042693 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 47042612  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 27461137 - 27461056
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27461137 cgtcgcctgagagattcgaactctcgcagggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 27461056  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 24354930 - 24354854
Alignment:
Q  293 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 369  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24354930 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 24354854  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 290 - 367
Target Start/End: Original strand, 27505196 - 27505273
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaag 367  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27505196 cgtcacctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaag 27505273  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 27480480 - 27480406
Alignment:
Q  294 gcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagc 368  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27480480 gcctgagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagc 27480406  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 27477401 - 27477320
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    |||| |||||||||||| || ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  27477401 cgtcacctgagagattcgaaatcttgcggggaaaccccatgtaattagcaggcacacgccttacccactcggccaaagcgac 27477320  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 13912471 - 13912386
Alignment:
Q  286 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13912471 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 13912386  T

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Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 26204125 - 26204040
Alignment:
Q  286 aaaacgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26204125 aaaacgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 26204040  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 35808883 - 35808794
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgacaatgttgt 379  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  35808883 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgactatgttgt 35808794  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 42348134 - 42348210
Alignment:
Q  293 cgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcg 369  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42348134 cgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcg 42348210  T

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Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 42396947 - 42397030
Alignment:
Q  289 acgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 372  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42396947 acgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgaca 42397030  T

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Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 37175834 - 37175753
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgac 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37175834 cgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagcgac 37175753  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 22685790 - 22685872
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 372  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22685790 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22685872  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 22753278 - 22753196
Alignment:
Q  290 cgtcgcctgagagattcaaactctcgcggggaaaccccatgtacttagcagacacacgccttaaccactcggccaaagcgaca 372  Q
    |||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  22753278 cgtcacctaagagattcgaactctcacggggaaaccccatgtacttagcaggcacacgccttaaccactcggccaaagtgaca 22753196  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 4819564 - 4819664
Alignment:
Q  74 ttgccacgacattgctttactgcatca-caagactgggctgatagatgggaagttgatccctattccacactgcaatgcgtgatttcaagatattaacga 172  Q
    ||||| ||||||||||||||| ||||| |||||| || || |||||| |||| |||||   | | |||||||||||| || |||||| |||||| |||||    
T  4819564 ttgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttgattgttgtgccacactgcaatacgcgatttcgagatatcaacga 4819663  T
Q  173 c 173  Q
    |    
T  4819664 c 4819664  T

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