View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13598_high_6 (Length: 361)
Name: NF13598_high_6
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 31188946 - 31188614
Alignment:
| Q |
19 |
agaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtcata |
118 |
Q |
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| T |
31188946 |
agaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtcata |
31188847 |
T |
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| Q |
119 |
accttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattt |
217 |
Q |
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| T |
31188846 |
tccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtgatctaatattt |
31188747 |
T |
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| Q |
218 |
taacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188746 |
taacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgca |
31188647 |
T |
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| Q |
318 |
tattctttttgtgcttcatgtttctgtgctcct |
350 |
Q |
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| T |
31188646 |
tattctttttgtgcttcatgtttctgtgttcct |
31188614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 31200753 - 31200445
Alignment:
| Q |
19 |
agaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgattaagtcata |
118 |
Q |
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| T |
31200753 |
agaagttggttgctgcgtatgctacaaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagtcgtgattaagtcata |
31200654 |
T |
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| Q |
119 |
accttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaa-nnnnnnnnnaggtgatctaatattt |
217 |
Q |
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| T |
31200653 |
tccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggtgatctaatattt |
31200554 |
T |
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| Q |
218 |
taacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgca |
317 |
Q |
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| T |
31200553 |
taacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcggtgctgccttgca |
31200454 |
T |
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| Q |
318 |
tattctttt |
326 |
Q |
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||||||||| |
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| T |
31200453 |
tattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 31170982 - 31170908
Alignment:
| Q |
36 |
tatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagtaactagtaagccgtgatt |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||| |
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| T |
31170982 |
tatgctacaaatggagaacaagctatactagaaaatgtttttattttatgtggaagtcactagaaagccgtgatt |
31170908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 31144843 - 31144770
Alignment:
| Q |
19 |
agaagttggttgctgcgtatgctacgaatggagaacaagctatactagaaaatgattttatcttatgtggaagta |
93 |
Q |
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||||||| |||||||| |||||||| ||||||||||| | ||||||||||||| ||||||||||| |||||||| |
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| T |
31144843 |
agaagtttgttgctgcatatgctac-aatggagaacatgttatactagaaaatatttttatcttatttggaagta |
31144770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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