View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13598_low_10 (Length: 288)
Name: NF13598_low_10
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 4775985 - 4775705
Alignment:
| Q |
1 |
aaatcgacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaat |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4775985 |
aaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaat |
4775886 |
T |
|
| Q |
101 |
atcgtactatagcagccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4775885 |
atcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaa |
4775786 |
T |
|
| Q |
201 |
cattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattttcttcg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4775785 |
cattggagctacatatctatgtgcaaaccctgtctttcactctaggatgaagcatattgccatagattatcattttgttcg |
4775705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 43061340 - 43061071
Alignment:
| Q |
7 |
acaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgta |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |
|
|
| T |
43061340 |
acaggtgcttatttcatttattttggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcgga |
43061241 |
T |
|
| Q |
107 |
ctatagcagccactactcaagagttaatatgggttcaaaatttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattgg |
206 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
43061240 |
ctatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattag |
43061141 |
T |
|
| Q |
207 |
agctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcatttt |
276 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
43061140 |
agctacatatctatgtgcaaaccctgtttttcactataggatgaaacacattgccatagattatcatttt |
43061071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
199 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 25450346 - 25450428
Alignment:
| Q |
193 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattt |
275 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||||| |
|
|
| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcattt |
25450428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 2607367 - 2607285
Alignment:
| Q |
193 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatcattt |
275 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| |||||||||||||| |
|
|
| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatcattt |
2607285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University