View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13598_low_12 (Length: 241)
Name: NF13598_low_12
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45142001 - 45141779
Alignment:
| Q |
1 |
tttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccg |
100 |
Q |
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| T |
45142001 |
tttcatattagcttcaactttactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccg |
45141902 |
T |
|
| Q |
101 |
taagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagcta |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
45141901 |
taagctccaagctcaccacacgttgaacgtacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagcta |
45141802 |
T |
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| Q |
201 |
cactggcagtacaaattatggat |
223 |
Q |
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| T |
45141801 |
cactggcagtacaaattatggat |
45141779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 45152638 - 45152491
Alignment:
| Q |
9 |
tagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctcc |
108 |
Q |
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| T |
45152638 |
tagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctcc |
45152539 |
T |
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| Q |
109 |
aagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttgga |
156 |
Q |
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| T |
45152538 |
aagctcactgcacgttgagcgaacaaggcctataagaccatgtttgga |
45152491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 38256456 - 38256313
Alignment:
| Q |
10 |
agcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctcca |
109 |
Q |
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|||||||||||||||| | |||| | ||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
38256456 |
agcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctcca |
38256357 |
T |
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| Q |
110 |
agctcaccgcacgttgaacgtacaagtcctaagagaccatgttt |
153 |
Q |
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||||||||||| | ||| | ||||| |||| ||||||||||| |
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| T |
38256356 |
agctcaccgcatgctgacctaacaaggcctataagaccatgttt |
38256313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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