View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13598_low_2 (Length: 640)
Name: NF13598_low_2
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 94 - 629
Target Start/End: Original strand, 10101860 - 10102389
Alignment:
| Q |
94 |
agcatctaaccacgacacgattttgacagaaacacaaacatcaaactttgagtcaaatttcaacaaaatatttatatattatgatatgcagatatagcct |
193 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10101860 |
agcatctaaccgcgatacgattttgacagaaacacaaacatcaaactttgagtcaaatttcaacaaaatatttatatattatgatatgcagatatagcct |
10101959 |
T |
|
| Q |
194 |
gcataaaagatgtgcaaaaagctatccattctatgttttaatacaacctggagtgaaagtttaacaatattagtataaaaatatgaattacacacaagct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10101960 |
acataaaagatgtgcaaaaagctatccattctatgttttaatacaacctggagtgaaagtttaacaatattagtataaaaatatgaattacacaaaagct |
10102059 |
T |
|
| Q |
294 |
tgtgaaatgcttttatccttgtcaaattttagcaagaaaataaataaattggtgccaccaattaatggagttttgtgcagccacaccctcagagtcaccg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10102060 |
tgtgaaatgcttttatccttgtcaaattttagcaagaaaataaataaattggtgccaccaattaatggtgttttgtgcagccacaccctcagagtcaccg |
10102159 |
T |
|
| Q |
394 |
tgagtacccatgttgaatttatttgctctaaagcttaattgtgaatgtatttcaaatacagatgcgtgcagctgtgcgtgaagttgctagttattttcct |
493 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10102160 |
tgagtactcatgttgaatttatttgctctaaagcttaattgtga----atttcaaatacagatgcgtgcagctgtgcgtgaagttgctagttattttcct |
10102255 |
T |
|
| Q |
494 |
actgccattattagtggaaggagtagaaataaggtaaaacattcacttaattaataatactgaatcatatagatatcc-ttttttcttaggctctttgca |
592 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10102256 |
actgccattattagtggaagaagtagaaataaggtaaaacattcacttaat---taatactgaatcatatagatatcctttttttcttaggctctttgca |
10102352 |
T |
|
| Q |
593 |
ttgttccattttagtctagtatttacatgacattcat |
629 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10102353 |
ttgttcctttttagtctagtatttacatgacattcat |
10102389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 10101745 - 10101819
Alignment:
| Q |
18 |
agatcgcaccacaattttcaattgcatacacaatcctactaccagtaggcaaaatcaagatacgatttaacccaa |
92 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
10101745 |
agatcgcaccacaattttcagttgcgtacacaatcctactaccagcaggcaaaatcgagatacgatttcacccaa |
10101819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University