View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13598_low_3 (Length: 600)

Name: NF13598_low_3
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13598_low_3
NF13598_low_3
[»] chr3 (4 HSPs)
chr3 (3-363)||(39550234-39550594)
chr3 (291-363)||(39253369-39253441)
chr3 (295-363)||(39552864-39552932)
chr3 (397-476)||(39550628-39550707)
[»] chr5 (1 HSPs)
chr5 (287-363)||(36248415-36248491)
[»] chr1 (2 HSPs)
chr1 (289-363)||(1235708-1235782)
chr1 (291-363)||(39825578-39825650)
[»] chr8 (2 HSPs)
chr8 (291-363)||(14180957-14181029)
chr8 (291-363)||(37877827-37877899)
[»] chr4 (3 HSPs)
chr4 (298-355)||(38487003-38487060)
chr4 (298-355)||(38495092-38495149)
chr4 (298-355)||(47819460-47819517)
[»] chr2 (1 HSPs)
chr2 (327-362)||(5872690-5872725)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 39550234 - 39550594
Alignment:
Q  3 aggaggagcagagatggggttgagaaggacagagacaaagttggtggctttgttacgcagagattgtttctttttcatgtttaagcaaagttaaaagaca 102  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39550234 aggaggatcagagatggggttgagaaggacagagacaaagttggtggctttgttacgcagagattgtttctttttcatgtttaagcaaagttgaaagaca 39550333  T
Q  103 aggtactatgtaatgttgttttgttctttgttggtgaaacggtgcagacaagataggttgacttggtttggttcctcaactcaacataggattgtctcgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39550334 aggtactatgtaatgttgttttgttctttgttggtgaaacggtgcagacaagataggttgacttggtttggttcctcaactcaacataggattgtcttgt 39550433  T
Q  203 gcagaaatacaccatagctaaagttgtagaatgagctatggtaaattatttgtttattaaaattcagtggttaaaataatcacaacaggacttcatggcc 302  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  39550434 gcagaaatacaccatagctaaagttgaagaatgagctatggtaaattatttgtttattaaaatacagtgggtaaattaatcacaacaggacttcatggcc 39550533  T
Q  303 caatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39550534 caatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 39550594  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 39253441 - 39253369
Alignment:
Q  291 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39253441 gactccatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtggagtcg 39253369  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 39552864 - 39552932
Alignment:
Q  295 tcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39552864 tcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgacccccagtgaagtcg 39552932  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 397 - 476
Target Start/End: Original strand, 39550628 - 39550707
Alignment:
Q  397 attatatccatcgttgatatttctatgatacacgaagaggaaaatgagaaacaacnnnnnnnaaagctattatcctctta 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  39550628 attatatccatcgttgatatttctatgatacacgaagaggaaaatgagaaacaactttttttaaagctattatcctctta 39550707  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 36248491 - 36248415
Alignment:
Q  287 acaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248491 acaggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 36248415  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 1235782 - 1235708
Alignment:
Q  289 aggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235782 aggacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 1235708  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 39825650 - 39825578
Alignment:
Q  291 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825650 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 39825578  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 14180957 - 14181029
Alignment:
Q  291 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14180957 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 14181029  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 37877827 - 37877899
Alignment:
Q  291 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37877827 gacttcatggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccagtgaagtcg 37877899  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 38487003 - 38487060
Alignment:
Q  298 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38487003 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 38487060  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 38495092 - 38495149
Alignment:
Q  298 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38495092 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 38495149  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 47819517 - 47819460
Alignment:
Q  298 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47819517 tggcccaatggataaggcgctggtctacggaaccagagattctgggttcgatccccag 47819460  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 5872690 - 5872725
Alignment:
Q  327 gaaccagagattctgggttcgatccccagtgaagtc 362  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5872690 gaaccagagattctgggttcggtccccagtgaagtc 5872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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