View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13598_low_4 (Length: 538)
Name: NF13598_low_4
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 40 - 489
Target Start/End: Original strand, 7062831 - 7063285
Alignment:
| Q |
40 |
acacatcaaataaaattttgtcaacacttctcaagcataattcttttgatgttaccacgctattaggaaatcatttgtaatctaaatatctggctctcga |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7062831 |
acacatcaaataaaattttgtcaacacttctcaagcataattcttttgatgttaccacgctattaggaaatcatttgtaatctaaatatctggctctcaa |
7062930 |
T |
|
| Q |
140 |
ctgtagttctctttaaatgaatgtcaaatggtgttttctcccaactaatatgaatgata-----caagcttaaacttagaagaccacaaaatacatttgt |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7062931 |
ctgtagttctctttaaatgaatgtgaaatggtgttttctcccaactaatatgaatgatatgatacaagcttaaacttagaagaccacaaaatacatttgt |
7063030 |
T |
|
| Q |
235 |
ctttttaatacaaccacatctcttaatnnnnnnngagacaacgttgacagaatcatttatttaaaaacaaatccactccttcaagtagtacatcccccaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7063031 |
ctttttaatacaaccacatctcttaataaaaaaagagacaacgttgacagaatcatttatttaaaaacaaatccactccttcaagtagtacatcccccaa |
7063130 |
T |
|
| Q |
335 |
atcaaacaaatactgtcaaaagtaaatcaaactcaaagctcttctaatcatgaatactaataccatttaaactttaaccattccaatataaaatttaagc |
434 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7063131 |
atcaaacaagtactgtcaaaagtaaatcaaactcaaagctcttctaatcatgaatactaataccatttaaactttaaccattccaatataaaatttaagc |
7063230 |
T |
|
| Q |
435 |
acttttattcaactactacgttcattgcaaaatatgctctcttgacagtaattca |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7063231 |
acttttattcaactactacgttcattgcaaaatatgctctcttgacagttattca |
7063285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 7058725 - 7058819
Alignment:
| Q |
431 |
aagcacttttattcaactactacgttcattgcaaaatatgctctcttgacagtaattcacaaatttaagcaactttccaacattcatatcttatt |
525 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7058725 |
aagcacttttattcgactactacgttgattgcaaaatatgctctcttgacagtaattcataaatttaagcaactttccaacattcatatgttatt |
7058819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 446 - 525
Target Start/End: Original strand, 7013973 - 7014052
Alignment:
| Q |
446 |
actactacgttcattgcaaaatatgctctcttgacagtaattcacaaatttaagcaactttccaacattcatatcttatt |
525 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7013973 |
actactacattcattgcaaaatatgctctcttgacagtaattcataaatttaagcaactttccaacattcatatgttatt |
7014052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 446 - 525
Target Start/End: Original strand, 7029331 - 7029410
Alignment:
| Q |
446 |
actactacgttcattgcaaaatatgctctcttgacagtaattcacaaatttaagcaactttccaacattcatatcttatt |
525 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7029331 |
actactacattcattgcaaaatatgctctcttgacagtaattcataaatttaagcaactttccaacattcatatgttatt |
7029410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 7013567 - 7013717
Alignment:
| Q |
193 |
atgatacaagctt-aaacttagaagaccacaaaatacat----ttgtctttttaatacaaccacatctcttaatnnnnnnnga----gacaacgttgaca |
283 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| | ||||| ||||||| |
|
|
| T |
7013567 |
atgatacaagcgtcaaacttagaagaccccaaaatacatacatttgtctttttaatacatcaacatctcttaatatacaaataaaaagacaatgttgaca |
7013666 |
T |
|
| Q |
284 |
gaatcatttatttaaaaacaaatccactccttcaagtagtacatcccccaa |
334 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7013667 |
gaatgatttatttaaaaactaatccactccttcaagtagtacagcccccaa |
7013717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 7028925 - 7029075
Alignment:
| Q |
193 |
atgatacaagctt-aaacttagaagaccacaaaatacat----ttgtctttttaatacaaccacatctcttaatnnnnnnnga----gacaacgttgaca |
283 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| | ||||| ||||||| |
|
|
| T |
7028925 |
atgatacaagcgtcaaacttagaagaccccaaaatacatacatttgtctttttaatacatcaacatctcttaatatacaaataaaaagacaatgttgaca |
7029024 |
T |
|
| Q |
284 |
gaatcatttatttaaaaacaaatccactccttcaagtagtacatcccccaa |
334 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7029025 |
gaatgatttatttaaaaactaatccactccttcaagtagtacagcccccaa |
7029075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 7058318 - 7058379
Alignment:
| Q |
274 |
aacgttgacagaatcatttatttaaaaacaaatccactccttcaagtagtacatcccccaaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
7058318 |
aacgttgacagaatcatttatttaaaaactaatccactccttcaagtaggacaacccccaaa |
7058379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 7029204 - 7029245
Alignment:
| Q |
385 |
tgaatactaataccatttaaactttaaccattccaatataaa |
426 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7029204 |
tgaatactaataccatctaaactttaaccattccaacataaa |
7029245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 7056680 - 7056716
Alignment:
| Q |
291 |
ttatttaaaaacaaatccactccttcaagtagtacat |
327 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7056680 |
ttatttaaaaactaatccactccttcaagtagtacat |
7056716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 7010836 - 7010869
Alignment:
| Q |
291 |
ttatttaaaaacaaatccactccttcaagtagta |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
7010836 |
ttatttaaaaactaatccactccttcaagtagta |
7010869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Original strand, 7013846 - 7013887
Alignment:
| Q |
385 |
tgaatactaataccatttaaactttaaccattccaatataaa |
426 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
7013846 |
tgaatactaataccatctaaactttaaccatttcaacataaa |
7013887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 7026194 - 7026227
Alignment:
| Q |
291 |
ttatttaaaaacaaatccactccttcaagtagta |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
7026194 |
ttatttaaaaactaatccactccttcaagtagta |
7026227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 7058608 - 7058657
Alignment:
| Q |
377 |
tctaatcatgaatactaataccatttaaactttaaccattccaatataaa |
426 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
7058608 |
tctaatcatgaatcctaatacaagctaaacttcaaccattccaatataaa |
7058657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University