View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13598_low_6 (Length: 367)
Name: NF13598_low_6
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 79 - 350
Target Start/End: Original strand, 8706565 - 8706836
Alignment:
| Q |
79 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
178 |
Q |
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| T |
8706565 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
8706664 |
T |
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| Q |
179 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctctt |
278 |
Q |
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| T |
8706665 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgatgtggctgttattctctt |
8706764 |
T |
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| Q |
279 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatatt |
350 |
Q |
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| T |
8706765 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatatt |
8706836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 8691930 - 8692055
Alignment:
| Q |
217 |
ttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctcttccttttgaaatgcta-tagattgaactttcataatgtt |
315 |
Q |
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| T |
8691930 |
ttttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgtt |
8692029 |
T |
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| Q |
316 |
tattttcttctacaattttacagtgt |
341 |
Q |
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| T |
8692030 |
tattttcttctaaaattttacagtgt |
8692055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 8706473 - 8706530
Alignment:
| Q |
20 |
agtcgttgaaaatggtctactatggaagcagtgacacagatgctgaagtaagtctctac |
78 |
Q |
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| T |
8706473 |
agtcgttgaaaatggtctactatggaagcagtgacacagatgctgaagt-agtctctac |
8706530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8691859 - 8691907
Alignment:
| Q |
18 |
caagtcgttgaaaatggtctactatggaagcagtgacacagatgctgaa |
66 |
Q |
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| T |
8691859 |
caagtcgttgagaatgatcgactatggaagcagtgacacagatgctgaa |
8691907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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