View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13598_low_8 (Length: 328)
Name: NF13598_low_8
Description: NF13598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13598_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 31026868 - 31027175
Alignment:
| Q |
6 |
ctgaaatgaaatcgctacagcttatgatctatttaatcagatgaatcatcgcggataatggatatggttgtggtagaaactaatcttcaattgccaaaaa |
105 |
Q |
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| T |
31026868 |
ctgaaatgaaatcgctacagcttatgatctatttaatcagatgaatcatcgcggataatggatatggttgtggtagaaactaatcttcaattgccaaaaa |
31026967 |
T |
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| Q |
106 |
cttgcgcttctgtgcaaacggatttctgtggtgcatcactgttgagttaaactgttttagatcctgtttgaatacataacgatacccacatgttttcaca |
205 |
Q |
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| T |
31026968 |
cttgcgcttctgtgcaaacggatttctgtggtgcatcactgttgagttaaactgttttagatcctgtttgaatacataacgatacccacatgttttcaca |
31027067 |
T |
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| Q |
206 |
tccacatgcaacccgtttccatcctcaaggcaagctgtcattgtgatatgatcaacatctttgaatgctttgttctgatagctcagagaatccctaggga |
305 |
Q |
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| T |
31027068 |
tccacatgcaacccgtttccgtcctcaaggcaagctgtcattgtgatatgatcaacatctttgaatgctttgttctgatagctcagagaatccctaggga |
31027167 |
T |
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| Q |
306 |
catatatt |
313 |
Q |
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|||||||| |
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| T |
31027168 |
catatatt |
31027175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 31016888 - 31017074
Alignment:
| Q |
74 |
tgtggtagaaactaatcttcaattgccaaaaacttgcgcttctgtgcaaacggatttctgtggtgcatcactgttgagttaaactgttttagatcctgtt |
173 |
Q |
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| T |
31016888 |
tgtggtagtacctaatcttcaattgccaaaaacttgcgcttttgtgaagatgaatttctgtggtgcatcattgttgagttaaactgttgttgatcctgtt |
31016987 |
T |
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| Q |
174 |
tgaatacataacgatacccacatgttttcacatccacatgcaacccgtttccatcctcaaggcaagctgtcattgtgatatgatcaa |
260 |
Q |
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| T |
31016988 |
taaatatgcaacgatacccacatttcttcacctccccatgcaaaccttctctttcatcaatgaaagttgtcattgtgatatgatcaa |
31017074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 31031942 - 31032087
Alignment:
| Q |
119 |
gcaaacggatttctgtggtgcatcactgttgagttaaactgttttagatcctgtttgaatacataacgatacccacatgttttcacatccacatgcaacc |
218 |
Q |
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||||||| ||| ||||||||||||| |||||||| |||||||| |||||||||||| |||||| ||||||| |||||| | | ||| ||||||||||| | |
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| T |
31031942 |
gcaaacgaattcctgtggtgcatcattgttgagtgaaactgttgtagatcctgtttaaatacacaacgatatccacatttctccacctccacatgcaaac |
31032041 |
T |
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| Q |
219 |
cgtttccatcctcaaggcaagctgtcattgtgatatgatcaacatc |
264 |
Q |
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| T |
31032042 |
cttttccgtccacagggacaattttcattgtgatataatcaacatc |
31032087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 31031875 - 31031923
Alignment:
| Q |
6 |
ctgaaatgaaatcgctacagcttatgatctatttaatcagatgaatcat |
54 |
Q |
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| T |
31031875 |
ctgaaatgcagttgctacagcttatgatctatttaatcagatgaatcat |
31031923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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