View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13599_low_2 (Length: 336)
Name: NF13599_low_2
Description: NF13599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13599_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 329
Target Start/End: Original strand, 34141870 - 34142200
Alignment:
| Q |
4 |
agcaccacagaggtcacagtttcatcttcattatactctttcttaataataatctctggcggccctgcaatcaaaaggttaatgtaagcgaatacaattg |
103 |
Q |
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| T |
34141870 |
agcaccacacaggtcacagtttcatcttcattatactctttcttaataataatctctggcggccctgcaatcaaaaggttaatgtaagcgcgtacaattg |
34141969 |
T |
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| Q |
104 |
catgaagccacatgtaataataatgataaacatacctgttgcattcaatttttcattgcaaatgaacaaattgggagtcatttccattggcattttcttc |
203 |
Q |
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| T |
34141970 |
catgaagccacatgtaataataatgataaacatacctgttgcattcaatttttcattgcaaatgaacaaattgggagtcatttccattggcattttcttc |
34142069 |
T |
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| Q |
204 |
ttttcacctgaaattataactgagatgattactt--ggtgaatcaagaggctcctctaac---cnnnnnnnntatgtcgaccaaaaaggcacaccaaggt |
298 |
Q |
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||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
34142070 |
tttacacctgaaattataactgagatgattacttcgggggaatcaagaggctcctctaacaaaaaaaaaaaacatgtcgaccaaaaaggcgcaccaaggt |
34142169 |
T |
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| Q |
299 |
gactttgatcatctgagagattggacatttc |
329 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34142170 |
gactttgatcatctgagagattggacatttc |
34142200 |
T |
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