View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13599_low_3 (Length: 220)
Name: NF13599_low_3
Description: NF13599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13599_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 37834968 - 37835150
Alignment:
| Q |
20 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaact |
119 |
Q |
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| T |
37834968 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttttattcaatgaacaact |
37835067 |
T |
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| Q |
120 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataa |
202 |
Q |
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| T |
37835068 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataa |
37835150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 12280991 - 12281147
Alignment:
| Q |
46 |
acaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
145 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12280991 |
acaacggataacatcctccaccagactacatgatatagcatgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
12281090 |
T |
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| Q |
146 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataa |
202 |
Q |
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| T |
12281091 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattaaatgaactagataa |
12281147 |
T |
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