View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_1 (Length: 897)
Name: NF1359_high_1
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 822; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 29 - 890
Target Start/End: Complemental strand, 38709929 - 38709068
Alignment:
| Q |
29 |
acttctgaacaaactaacccttcactaaaacatctaacatctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatacaagtgtgtagta |
128 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38709929 |
acttctgaacaaaccaacccttcactaaaacatctaacatctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatagaagtgtgtagta |
38709830 |
T |
|
| Q |
129 |
attcaccagaggactcttgtagaatggtttattaaagtccttaagaaaatggatttagttgatctcataaagaattttgccaggaaaatagaggttccca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709829 |
attcaccagaggactcttgtagaatggtttattaaagtccttaagaaaatggatttagttgatctcataaagaattttgccaggaaaatagaggttccca |
38709730 |
T |
|
| Q |
229 |
gaccacctaccattgcagatactacattcaatcaaaatcttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaat |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709729 |
gaccacctaccattgcagataccacattcaatcaaaatcttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaat |
38709630 |
T |
|
| Q |
329 |
acctttcgaagtattagttcatgggtgcaatcgatatcttttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctgga |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38709629 |
acctttcgaagtattagttcatgggtgcaatcgatatcttttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctgga |
38709530 |
T |
|
| Q |
429 |
ggttcagatcgaattgctagatatatgatatttcatagttataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggcc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38709529 |
ggttcagatcgaattgctagatatatgatatctcatagttataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggcc |
38709430 |
T |
|
| Q |
529 |
aaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagt |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38709429 |
aaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagt |
38709330 |
T |
|
| Q |
629 |
tacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaata |
728 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38709329 |
tacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaata |
38709230 |
T |
|
| Q |
729 |
tctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttg |
828 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38709229 |
tctgacttcaccccagtttcagcattaacaatctctccattcttttccacacggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttg |
38709130 |
T |
|
| Q |
829 |
tgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
890 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38709129 |
tgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctca |
38709068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 637 - 890
Target Start/End: Complemental strand, 10047358 - 10047105
Alignment:
| Q |
637 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
736 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
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|
| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
737 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
836 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
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|
| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
837 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
890 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||| |
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|
| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctca |
10047105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 590
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
527 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
590 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
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|
| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 711 - 843
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
711 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
810 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
811 |
catcaatgtatacagttgtgttctcatcaattt |
843 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||| |
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|
| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 697 - 871
Target Start/End: Original strand, 739517 - 739691
Alignment:
| Q |
697 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
796 |
Q |
| |
|
||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
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|
| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
|
| Q |
797 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctc |
871 |
Q |
| |
|
||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |
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|
| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctc |
739691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 582
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
509 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
582 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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