View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_12 (Length: 411)
Name: NF1359_high_12
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_12 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 405
Target Start/End: Original strand, 16382764 - 16383144
Alignment:
| Q |
30 |
gtaataatgctatttgtacctttttggttgggacttccaaagagtaatgcacttctacttaaataatttccactgccagtgagacctggacctcttaacc |
129 |
Q |
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| T |
16382764 |
gtaatgatgctatttgtacctttttggttgggacttccaaagagtaatgcacttctgcttaaataatttccactgccagtgagacctggacctcttaacc |
16382863 |
T |
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| Q |
130 |
catccatccctttccacattgtctaatatagaaattataatgtg----ttagttcataaacaaaaggaga---caaaaatgaatggataaaaggtaaaga |
222 |
Q |
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| T |
16382864 |
catccattcctttccacattgtctaaaa--gaaattacaatatgcatgttagttcataaacaaaacaaaaacacaaaaatgaatgaataaaatctaaaga |
16382961 |
T |
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| Q |
223 |
gcatgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaa |
322 |
Q |
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| T |
16382962 |
gcttgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgagggaattggacaaa |
16383061 |
T |
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| Q |
323 |
agcaagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatctcac |
405 |
Q |
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| T |
16383062 |
agcaagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcac |
16383144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 43 - 405
Target Start/End: Complemental strand, 15912 - 15546
Alignment:
| Q |
43 |
ttgtacctttttggttgggacttccaaagagtaatgcacttctacttaaataatttccactgccagtgagacctggacctcttaacccatccatcccttt |
142 |
Q |
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| T |
15912 |
ttgtacctttttggtttggacttccaaagagtaatgcacttctacttatataatttccactgccagttagacctggacctcttaatccatccattccttt |
15813 |
T |
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| Q |
143 |
ccacattgtctaatatagaa---attataatgtgttagttcataaacaaaag---gagacaaaaatgaatggataaaaggtaaagagcatgaaattttgg |
236 |
Q |
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| T |
15812 |
ccactttgtctaatggaaaatacaatataatgt--tagttcataaacaaaacaaagacacaaaaatgaatggataaagagcttagaggttgaaattttgg |
15715 |
T |
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| Q |
237 |
tgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagcaagatcttgag |
336 |
Q |
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| T |
15714 |
tgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgagggaattgaacaaaagcaacatctttag |
15615 |
T |
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| Q |
337 |
atattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatctcac |
405 |
Q |
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| T |
15614 |
aggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcatatcac |
15546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 405
Target Start/End: Original strand, 17581675 - 17582051
Alignment:
| Q |
31 |
taataatgctatttgtacctttttggttgggacttccaaagagtaatgcacttctacttaaataatttccactgccagtgagacctggacctcttaaccc |
130 |
Q |
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| T |
17581675 |
taataatgctacatgtacctttttgttttggacttccaaagagtaatgcacttctacttaaataatttccactgccagtgagacctggacctcttaatcc |
17581774 |
T |
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| Q |
131 |
atccatccctttccacattgtctaatatagaaattataatgtgttagttcataaacaaaagga---gacaaaaatgaatggataaaaggtaaagagc--a |
225 |
Q |
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| T |
17581775 |
atccattcctttccaccttgtctaata--gaaatggcaatatgttacttgataaactaaataaacagacataaattaatggagagaaagtgaagatttaa |
17581872 |
T |
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| Q |
226 |
tgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagc |
325 |
Q |
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| T |
17581873 |
ttaaattt-ggtgacataccgtaaaagcattcctagcctgactatcatatatatctttcttgctgaggttgtgaaacatttgagggaattggacaaaagc |
17581971 |
T |
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| Q |
326 |
aagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatctcac |
405 |
Q |
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| T |
17581972 |
aagatctttggaggtttcaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcac |
17582051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 405
Target Start/End: Complemental strand, 271788 - 271625
Alignment:
| Q |
242 |
taccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagcaagatcttgagatatt |
341 |
Q |
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|||| |||||||| |||||| | | ||| ||| |||||||| ||||||| ||||||||||||||| |||||||| ||||| |||| || || ||| || |
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| T |
271788 |
taccttaaaagcagtcctagattgattatcatagatgtcttttttgctaaggttgtgaaacatttgagggaattgaacaaatgcaatatatttagaggtt |
271689 |
T |
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| Q |
342 |
ttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatctcac |
405 |
Q |
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| T |
271688 |
tctggatcaagaaagaaacacatggcttgtttggctgaagatgggtcattacaatacatatcac |
271625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 271967 - 271874
Alignment:
| Q |
60 |
ggacttccaaagagtaatgcacttctacttaaataatttccactgccagtgagacctggacctcttaacccatccatccctttccacattgtct |
153 |
Q |
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| T |
271967 |
ggacttccaaataataatgcacttctattcaagtaattaccagtgccagaaagaccaggacctctcaaaccatccatcccttgccacattgtct |
271874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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