View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_13 (Length: 409)
Name: NF1359_high_13
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 403
Target Start/End: Original strand, 53956118 - 53956516
Alignment:
| Q |
4 |
tacagctccgcatgcatattcattacaatacctataataataataaccgctaccatataagttattcgtgcattctaagcttttataaataattaaaaga |
103 |
Q |
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| T |
53956118 |
tacagctccgcatgcatattcattacaatacctataataataataaccactaccatataagttattcgtgcattctaagctttcataaataattaaaaga |
53956217 |
T |
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| Q |
104 |
ataggaaatnnnnnnntaa-tcacgtacactccttcttgctttttagcagattatgcttcctcatcatgagtacaacctgtagtttgagtaagaatcatt |
202 |
Q |
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| T |
53956218 |
atagggaataaaaaaaaaaatcacgtacactccttcttgctttttagcagattatgcttcctcatcatgagtacaacctgtagtttgagtaagaatcatt |
53956317 |
T |
|
| Q |
203 |
cattgctccaaaggtcagaaaaattaaaatttaattacaccagtaaagcaatatttgatcacaatattaagttaagcttaatctaacggtactgtcttta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53956318 |
cattgctccaaaggtcagaaaaattaaaatttaattacaccagtaaagcaatatttgatcacaatattaagttaagcttaatttaacggtactgtcttta |
53956417 |
T |
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| Q |
303 |
attctttaaggtatttctggatgtttttagtttcataatcttattcacctaaataaaagtagacagacacataaattttccataatcctaacctttgctt |
402 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53956418 |
attctttatggtatttctggatgtttttagtttcataatcttattcacctaaataaaagtagacag--acataaattttccataatcctaacctttgctt |
53956515 |
T |
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