View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1359_high_15 (Length: 399)
Name: NF1359_high_15
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1359_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 40458420 - 40458710
Alignment:
| Q |
34 |
gaagaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacagtaagtatcttcccctctaaaacttagaaaaacatcgtac |
133 |
Q |
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| T |
40458420 |
gaagaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacaataagtatcttcccctctaaaacttagaaaaacatcgtac |
40458519 |
T |
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| Q |
134 |
ttgtagctgctgccatcaacctcttcattcatcatggccatgaccaaaggattagattacggcttctctttaatttttcaattaccgaaaggctctaatg |
233 |
Q |
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| T |
40458520 |
ttgtagctgctgccatcaacctcttcattcatcatggccatgaccaaaggattagattacggcttctctttaatttttcaattaccgaaaggctctaatg |
40458619 |
T |
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| Q |
234 |
aacacaaacatgttatcttgttagtagagaatccacgcggtttgctgttgactcctctttaatccttcgatacttttactagtagtataat |
324 |
Q |
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| T |
40458620 |
aacacaaacatgttatcttgttagtagagaatccacgcggtttgctgttgactcctctttaatccttcgatacttttactagtagtataat |
40458710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 40405344 - 40405178
Alignment:
| Q |
32 |
aagaagaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacagtaagtatcttcccctctaaaacttagaaaaacatcgt |
131 |
Q |
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| T |
40405344 |
aagaagaaggtcttgattctcttgttgctcaaaccatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaacatagaaaaacatcgt |
40405245 |
T |
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| Q |
132 |
acttgtagctgctgccatcaacc-tcttcattcatcatggccatgaccaaaggattagattacggct |
197 |
Q |
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| T |
40405244 |
acatgtagctgcagccatcaacctttttcattcaacatggccatgaccaaaggataagattatggct |
40405178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 40407816 - 40407709
Alignment:
| Q |
36 |
agaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacagtaagtatcttcccctctaaaacttagaaaaacatcgtactt |
135 |
Q |
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|||||||||||||| ||||||| || | ||||||||||||| |||||| ||||||| ||||||| || || |||||||| || ||||||||||||||| |
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| T |
40407816 |
agaaggtcttgattctcttgttacgcagagcatgatagagactacctgtgaaggtatagtaagtgtccacctttctaaaacataaaaaaacatcgtactt |
40407717 |
T |
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| Q |
136 |
gtagctgc |
143 |
Q |
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|||||||| |
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| T |
40407716 |
gtagctgc |
40407709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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