View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1359_high_18 (Length: 391)

Name: NF1359_high_18
Description: NF1359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1359_high_18
NF1359_high_18
[»] chr3 (7 HSPs)
chr3 (30-291)||(19577639-19577900)
chr3 (108-291)||(8772002-8772187)
chr3 (221-291)||(34275061-34275131)
chr3 (107-216)||(13592232-13592341)
chr3 (223-286)||(16227502-16227565)
chr3 (182-291)||(8767119-8767230)
chr3 (116-235)||(19165742-19165861)
[»] chr2 (5 HSPs)
chr2 (30-291)||(25533671-25533934)
chr2 (221-291)||(28922996-28923066)
chr2 (225-290)||(16816196-16816261)
chr2 (225-290)||(16855353-16855418)
chr2 (222-283)||(23008649-23008710)
[»] chr1 (2 HSPs)
chr1 (31-286)||(18828888-18829145)
chr1 (208-291)||(18828832-18828915)
[»] chr7 (6 HSPs)
chr7 (41-240)||(13251073-13251272)
chr7 (221-291)||(19202923-19202993)
chr7 (224-290)||(1586972-1587038)
chr7 (107-218)||(20580976-20581087)
chr7 (207-291)||(8315631-8315715)
chr7 (228-291)||(13251311-13251374)
[»] chr6 (4 HSPs)
chr6 (221-291)||(21843006-21843076)
chr6 (148-239)||(28587368-28587459)
chr6 (231-291)||(11176263-11176323)
chr6 (104-180)||(14793362-14793438)
[»] chr8 (5 HSPs)
chr8 (222-291)||(26828294-26828363)
chr8 (221-291)||(24720870-24720940)
chr8 (209-291)||(25232121-25232203)
chr8 (221-272)||(14998305-14998356)
chr8 (104-180)||(12584069-12584145)
[»] chr5 (6 HSPs)
chr5 (207-291)||(16783289-16783373)
chr5 (207-291)||(19054575-19054659)
chr5 (223-291)||(25404975-25405043)
chr5 (221-289)||(24319096-24319164)
chr5 (208-280)||(24263550-24263621)
chr5 (254-291)||(31213966-31214003)
[»] chr4 (3 HSPs)
chr4 (74-216)||(13130219-13130361)
chr4 (223-291)||(12609371-12609439)
chr4 (224-291)||(13130422-13130490)
[»] scaffold0711 (1 HSPs)
scaffold0711 (221-291)||(6222-6292)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 19577639 - 19577900
Alignment:
Q  30 gtcacttaagtaggacgagcacatattccagaagatcaaagattggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaa 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577639 gtcacttaagtaggacgagcacatattccagaaaatcaaagattggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaa 19577738  T
Q  130 gagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaagcgcagaataggag 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| | |||    
T  19577739 gagaaagaagaaggattgtgtgttctttctttcatttaagccaccctaacaggattggggcgtcgagctaatagacgttaaatgaagcacagaagacgag 19577838  T
Q  230 gcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577839 gcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 19577900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 291
Target Start/End: Complemental strand, 8772187 - 8772002
Alignment:
Q  108 tcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgt 207  Q
    ||||||||||||| || ||||||||||||| ||| |||  ||||||| ||||||  | ||||||||||||||| ||||| ||||| |||||||||  |||    
T  8772187 tcatggagttccttccaaacaagagaaagaggaaagatgatgtgttctttcttttgtataagccaccctaacaggattgaggcgttgagctaataattgt 8772088  T
Q  208 taaatgaagcgcagaataggaggcaacctattg--accgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    || || |||||| | || |||||||| | || |  ||| || ||||||||| |||||||||||| |||||||||||||||||||||    
T  8772087 tatataaagcgctgcatgggaggcaatccatgggaaccttcgggactcagatgttaaacaagcgttgaatgggaggcaacccatta 8772002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 34275061 - 34275131
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  34275061 gaataggaggcagcctattgaccgtcgggactcagatgttaaagaagcgctgaatgggaggcaacccatta 34275131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 13592341 - 13592232
Alignment:
Q  107 ttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatg 206  Q
    |||||||||||||| || ||||||||||| | | |||||  ||||||| ||||||||| || |||||||||||| |||   |||||| |||||||||| |    
T  13592341 ttcatggagttccttccgaacaagagaaaaagggaggatgatgtgttctttctttcatataggccaccctaacaggatcaaggcgtcaagctaatagacg 13592242  T
Q  207 ttaaatgaag 216  Q
    | ||||||||    
T  13592241 tcaaatgaag 13592232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 16227565 - 16227502
Alignment:
Q  223 ataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacc 286  Q
    ||||||||||||||||||||||||  |||||| || ||||||| |||||||||| |||| ||||    
T  16227565 ataggaggcaacctattgaccgtcgagactcacactttaaacatgcgctgaatgagaggaaacc 16227502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 8767230 - 8767119
Alignment:
Q  182 gattggggcgtcgagctaatagatgttaaatgaagcgcagaataggaggcaacctattg--accgtctggactcagacgttaaacaagcgctgaatggga 279  Q
    ||||| ||||| |||||||||  ||||| ||||||| | | || |||||||| | || |  ||| || ||||||||| ||||| |||||||| |||||||    
T  8767230 gattgaggcgttgagctaataattgttatatgaagctctgcatgggaggcaatccatgggaaccttcgggactcagatgttaagcaagcgcttaatggga 8767131  T
Q  280 ggcaacccatta 291  Q
    ||||||||||||    
T  8767130 ggcaacccatta 8767119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 19165742 - 19165861
Alignment:
Q  116 ttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaa 215  Q
    ||||| || ||||||||||  | |||||||  ||||||| |||||| ||  | | || ||||||| || || | ||||||||||||||| ||||||||||    
T  19165742 ttccttccgaacaagagaagaaggaaggatgatgtgttctttcttttatacatgtcagcctaacaggactgagtcgtcgagctaatagacgttaaatgaa 19165841  T
Q  216 gcgcagaataggaggcaacc 235  Q
    |||| | || ||||||||||    
T  19165842 gcgctgcatgggaggcaacc 19165861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 25533934 - 25533671
Alignment:
Q  30 gtcacttaagtaggacgagcacatattccagaagatcaaagattggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaa 129  Q
    |||| ||||| |||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  25533934 gtcagttaaggaggatgagcacatattccagaaaagtaaagattggagcatgggaacacttaattcttcttacaaagttcatgaagttccttcctaacaa 25533835  T
Q  130 gagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaagcgcagaataggag 229  Q
    ||||||||||||||||  ||||||| ||||||||| ||||||||||||||| |||   |||||| |||||||||| |||||||||||||| | || ||||    
T  25533834 gagaaagaagaaggatgatgtgttctttctttcatataagccaccctaacaggatcaaggcgtcaagctaatagacgttaaatgaagcgctgcatgggag 25533735  T
Q  230 gcaacctat-tgacc-gtctggactc-agacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||  |||| |||  ||||| |||||| ||| |||||||||||||||||||||||||||    
T  25533734 gcaacctatgggacctgtc-agactcaagacgtaaaagaagcgctgaatgggaggcaacccatta 25533671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 28923066 - 28922996
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  28923066 gaataggaggccacctattaatcgtcgggactcagacgttaaacaaacactgaatgggaggcaacccatta 28922996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 16816261 - 16816196
Alignment:
Q  225 aggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatt 290  Q
    |||||| |||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||    
T  16816261 aggaggaaacctattgatcatcgggactaagacgttaaacaagcgctgaatgggaggcaacccatt 16816196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 16855418 - 16855353
Alignment:
Q  225 aggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatt 290  Q
    |||||| |||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||    
T  16855418 aggaggaaacctattgatcatcgggactaagacgttaaacaagcgctgaatgggaggcaacccatt 16855353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 23008649 - 23008710
Alignment:
Q  222 aataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggca 283  Q
    |||||| |||||| |||| |||||| ||||| ||||||||||||| ||||| ||| ||||||    
T  23008649 aataggtggcaacttattaaccgtcgggactgagacgttaaacaaacgctggatgagaggca 23008710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 18829145 - 18828888
Alignment:
Q  31 tcacttaagtaggacgagcacatattccagaagatcaaagattggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaag 130  Q
    |||||| || ||||||| ||||||||| || | | |||||||| |||||   |||||||||||||| |||| |||||||||||||||||| |  ||||||    
T  18829145 tcacttgaggaggacgaacacatattctagtaaagcaaagatttgagcacaagaacacttaattctccttacaaagttcatggagttccttcggaacaag 18829046  T
Q  131 agaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaagcgcagaataggagg 230  Q
    ||||||| ||||| |  ||||||  ||||||||| ||||||||||||||| ||| | |||||| || ||||||| |||||||||||||| | || |||||    
T  18829045 agaaagaggaagggtgatgtgttatttctttcatataagccaccctaacaggatcgaggcgtcaagataatagacgttaaatgaagcgccgcatgggagg 18828946  T
Q  231 caacctattg--accgtctggactcagacgttaaacaagcgctgaatgggaggcaacc 286  Q
    |||||||| |  |||||| |   | |||||| ||| ||||||||||| ||||||||||    
T  18828945 caacctatgggaaccgtcagacttaagacgtaaaagaagcgctgaataggaggcaacc 18828888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 291
Target Start/End: Complemental strand, 18828915 - 18828832
Alignment:
Q  208 taaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||| ||||||| |||||||||||||||||||||  ||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  18828915 taaaagaagcgctgaataggaggcaacctattgagagttgggaatcagacgttaaacaagcgctgaatgggaggcaacccatta 18828832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 13251073 - 13251272
Alignment:
Q  41 aggacgagcacatattccagaagatcaaagattggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaagagaaagaaga 140  Q
    |||||||||||||||| | | | | || |||||||||||    ||||||||||||| |||  ||| |||||||||||||| || ||||||||||||| ||    
T  13251073 aggacgagcacatatttccgtaaagcagagattggagcacaataacacttaattctccttgcaaaattcatggagttccttccaaacaagagaaagagga 13251172  T
Q  141 aggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaagcgcagaataggaggcaacctattg 240  Q
    |||||  ||||||| || |||||| ||||||||| ||| | ||| | || |||||||||||||| |||||||||||||| | || |||||||||| ||||    
T  13251173 aggatgatgtgttctttatttcatataagccaccgtaataggatcgaggtgtcgagctaatagacgttaaatgaagcgctgcatgggaggcaacccattg 13251272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 19202993 - 19202923
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  19202993 gaataggaggcaacctattgaccgtcgggactcagacgttaaacaagcgctgaatgggaggcaactcatta 19202923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 1587038 - 1586972
Alignment:
Q  224 taggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatt 290  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  1587038 taggaggcaacctattgatcgtcgggactgagacgttaaacaagcgctgaatgggaagcaacccatt 1586972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 20581087 - 20580976
Alignment:
Q  107 ttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatg 206  Q
    |||||||||||||| || ||||||||||||| ||||| |  ||||||| |||||||||  | |||||||||| |||||   || |||||||||||||| |    
T  20581087 ttcatggagttccttccgaacaagagaaagaggaaggttgatgtgttctttctttcatacaggccaccctaagatgatcaaggggtcgagctaatagacg 20580988  T
Q  207 ttaaatgaagcg 218  Q
    ||||||| ||||    
T  20580987 ttaaatggagcg 20580976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 8315631 - 8315715
Alignment:
Q  207 ttaaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||| ||||||| ||||| |||||||| ||||||| ||| ||||| ||||||||||||| || | ||||||||| |||||||||    
T  8315631 ttaaaagaagcgctgaatatgaggcaacttattgactgtcaggactaagacgttaaacaaacgatcaatgggaggaaacccatta 8315715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 13251311 - 13251374
Alignment:
Q  228 aggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||||||| ||||   ||||| || ||||||||||||||||||||||| |||||||||    
T  13251311 aggcaacctattgagcgtcataactcaaacattaaacaagcgctgaatgggaggaaacccatta 13251374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 21843006 - 21843076
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  21843006 gaataggaggcaacctattgaccgtctagactcagacgttaaacaagcgctgaaagggaggcaacccatta 21843076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 28587368 - 28587459
Alignment:
Q  148 tgtgttcattctttcatttaagccaccctaacatgattggggcgtcgagctaatagatgttaaatgaagcgcagaataggaggcaacctatt 239  Q
    |||||||  |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || | ||||||| |||| ||||    
T  28587368 tgtgttctctctttcatataagccaccctaacaggattgaggcgtcgagctaatagacgttaaatgaagtgctggataggagacaacatatt 28587459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 11176263 - 11176323
Alignment:
Q  231 caacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||| |||||| |||| ||||| |||| |||||||| |||| |||||||||||||||||||    
T  11176263 caacttattgatcgtcgggactaagacattaaacaatcgctaaatgggaggcaacccatta 11176323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 14793362 - 14793438
Alignment:
Q  104 aagttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaaca 180  Q
    ||||||||||| ||||| || |||||||| ||||||||||||  | | ||| |||| ||||||  ||||||||||||    
T  14793362 aagttcatggaattcctgccaaacaagaggaagaagaaggatgatatattctttctatcatttttgccaccctaaca 14793438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 26828294 - 26828363
Alignment:
Q  222 aataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  26828294 aataggaggcaacctattgaccgtcaggactcatacgttaaacaagcgttgaatgggaggcaacccatta 26828363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 24720870 - 24720940
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||    
T  24720870 gaataggaggcaacttattgaccgtcgggactcagacgttaaacaagcgcttaataggagacaacccatta 24720940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 25232203 - 25232121
Alignment:
Q  209 aaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||||  |||||||| ||||||||||||||||| ||||||| | |||||||||| | |||||||||||||||| ||||    
T  25232203 aaatgaagcgttgaataggatgcaacctattgaccgtcaggactcaaatgttaaacaagtgttgaatgggaggcaaccaatta 25232121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 14998356 - 14998305
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctg 272  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  14998356 gaataggagacaacctattgaccgtcgggaatcagacgttaaacaagcgctg 14998305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 12584069 - 12584145
Alignment:
Q  104 aagttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccaccctaaca 180  Q
    ||||||||||| ||||| || |||||||| |||||||||||| || | ||| |||| ||||||  || |||||||||    
T  12584069 aagttcatggaattcctaccaaacaagaggaagaagaaggatggtatattctttctatcatttttgcaaccctaaca 12584145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 16783289 - 16783373
Alignment:
Q  207 ttaaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||| |||||||||||    
T  16783289 ttaaaagaagcgctgaataggaggcaacctattaaccgtcgggactcagacgttgaacaagcgctgaaggggatgcaacccatta 16783373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 19054659 - 19054575
Alignment:
Q  207 ttaaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||| ||||||| | ||||||| ||| ||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  19054659 ttaaaagaagcgctggataggagacaatctattgaccgctgggactcagacgttaaacaaacgctgaatgggaggcaacccatta 19054575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 25404975 - 25405043
Alignment:
Q  223 ataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||| |||||||||||| || ||| |||||||||||||||| | |||||||||||||||||||||    
T  25404975 ataggaggaaacctattgaccatcgggattcagacgttaaacaagtgttgaatgggaggcaacccatta 25405043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 24319096 - 24319164
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccat 289  Q
    |||||||||||||||||||||| ||  |||||| ||| ||||| ||||| |||||||||||||||||||    
T  24319096 gaataggaggcaacctattgactgttgggactcggacattaaaaaagcgttgaatgggaggcaacccat 24319164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 24263621 - 24263550
Alignment:
Q  208 taaatgaagcgcagaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggag 280  Q
    |||| ||||| | ||||| ||||||||||||| |  ||| ||||| |||||||||||||||||||||||||||    
T  24263621 taaaagaagcactgaatatgaggcaacctatt-attgtcaggactaagacgttaaacaagcgctgaatgggag 24263550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 31214003 - 31213966
Alignment:
Q  254 agacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  31214003 agacgttaaacaagcgctgaatgggaagcaatccatta 31213966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 13130219 - 13130361
Alignment:
Q  74 ggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttcattctttcatttaagccac 173  Q
    |||||||| ||||||||| |||| |||   || ||||||||||||||    ||||||||||||| |||||||  ||||||| |||||||||  |||||||    
T  13130219 ggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagccac 13130318  T
Q  174 cctaacatgattggggcgtcgagctaatagatgttaaatgaag 216  Q
    ||||| | ||| | ||||||||||||||| | || ||||||||    
T  13130319 cctaagaggatcgaggcgtcgagctaataaacgtaaaatgaag 13130361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 12609439 - 12609371
Alignment:
Q  223 ataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||| |||||||||||| | ||||||    
T  12609439 ataggagacaacctattgaccgtcgagactcagacgttaaccaagcgttgaatgggaggcgatccatta 12609371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 13130422 - 13130490
Alignment:
Q  224 taggaggcaacctattgaccgtctgg-actcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||| |||||||||| |||| || ||||||||||||||||| ||||||||||||||  ||||||||    
T  13130422 taggaggtaacctattgatcgtcggggactcagacgttaaacaaacgctgaatgggaggtgacccatta 13130490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 6222 - 6292
Alignment:
Q  221 gaataggaggcaacctattgaccgtctggactcagacgttaaacaagcgctgaatgggaggcaacccatta 291  Q
    ||||||||| ||||||||||||| || | ||| |||||||||| ||| |||||||||||||||||||||||    
T  6222 gaataggagacaacctattgaccatcagaactaagacgttaaaaaagagctgaatgggaggcaacccatta 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University